| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,186,153 – 2,186,262 |
| Length | 109 |
| Max. P | 0.500000 |
| Location | 2,186,153 – 2,186,262 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 86.21 |
| Shannon entropy | 0.23383 |
| G+C content | 0.40044 |
| Mean single sequence MFE | -28.40 |
| Consensus MFE | -20.47 |
| Energy contribution | -21.59 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 2186153 109 + 22422827 UAAGAGAUCACUGACGAUUG-CACUACUUAUGCAAGAGUUAGGCAACUGGAUCGUUGCACUA---------AUCGCAGUAGAUUUUUAAUUAAGGUCACUGGCUCAUAGCCAUUAAAUC- ..(((((((((((.((((((-((.......)))))...(((((((((......))))).)))---------)))))))).)))))))............((((.....)))).......- ( -29.80, z-score = -2.61, R) >droEre2.scaffold_4644 2151686 119 + 2521924 UAAGAGAUCACUGGCGAUUG-CACUACUUAUGCAAGAGUUAAGCAACUAGAUCGUUGGACUAGAUCGUCUAAUAGCACUAGAUUUUUAAUUAAUGUCACUGGCUUAUACCCAAUAAAAUC ...(((.(((.(((((.(((-(...((((......))))...))))((((...(((((((......)))))))....))))............))))).))))))............... ( -23.10, z-score = -0.52, R) >droYak2.chrX 15630166 114 - 21770863 UAAAAGAUCACUGGCGAUUGGCACUUCUUAUGCAAGAGCUAAGCAACUGGAUCGUUGCACUGA-----CUAAUCGCCGUAGGUUUAUAAUUAAGGUCACUGGCUUGCAGCCAAUAUAUG- ....(((((((.(((((((((((.(((((....)))))....(((((......)))))..)).-----))))))))))).)))))..............((((.....)))).......- ( -30.80, z-score = -1.20, R) >droSec1.super_10 1971215 109 + 3036183 UAAGAGAUCACUGGCGAUUG-CACGACUUAUGCAAGAGUUAGGCAACUGGAUCGUUGCACUA---------AUCGCAGUAGAUUUUUAAUUAAGGUCACUGGCUCAUAGCCAUUAAAUC- ..(((((((((((.((((((-((.......)))))...(((((((((......))))).)))---------)))))))).)))))))............((((.....)))).......- ( -29.80, z-score = -2.19, R) >droSim1.chrX 1541746 109 + 17042790 UAAGAGAUCACUGGCGAUUG-CACUACUUAUGCAAGAGUUAGGCAACUGGAUCGUUGCACAA---------AUCGCAGUAGAUUUUUAAUUAAGGUCACUGGCUCAUAGCCAUUAAAUC- ...........((((..(((-((.......)))))((((((((((((......)))))....---------.........((((((.....)))))).)))))))...)))).......- ( -28.50, z-score = -2.01, R) >consensus UAAGAGAUCACUGGCGAUUG_CACUACUUAUGCAAGAGUUAGGCAACUGGAUCGUUGCACUA_________AUCGCAGUAGAUUUUUAAUUAAGGUCACUGGCUCAUAGCCAUUAAAUC_ ..(((((((((((.((((............(((((((.((((....)))).)).)))))............)))))))).)))))))............((((.....))))........ (-20.47 = -21.59 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:46 2011