| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,182,241 – 2,182,312 |
| Length | 71 |
| Max. P | 0.555393 |
| Location | 2,182,241 – 2,182,312 |
|---|---|
| Length | 71 |
| Sequences | 4 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 52.30 |
| Shannon entropy | 0.79993 |
| G+C content | 0.34975 |
| Mean single sequence MFE | -20.65 |
| Consensus MFE | -2.24 |
| Energy contribution | -6.05 |
| Covariance contribution | 3.81 |
| Combinations/Pair | 1.48 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.11 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.555393 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2182241 71 + 22422827 AAACGUACAUAUAUAUGUAUGUAUAUGUGCAGG--CAGGCAUCCAUAGACAUGUUUGUCCACUUGUCUGUAUA ....(((((((((((....)))))))))))..(--((((((......((((....))))....)))))))... ( -23.80, z-score = -2.71, R) >droSim1.chrX 1537976 59 + 17042790 ------AAACGUACAUAUACAUAUAUGUGCA--------CAUACAUGGACAUGUUUGUCCACUUGUGUGUAUA ------....((((((((....))))))))(--------((((((((((((....))))))..)))))))... ( -23.50, z-score = -3.67, R) >droYak2.chrX 15626182 73 - 21770863 AAAUACACAUGGAUGUGUAUGUGUGCAUACAUGGACAUGUAGAUAUGUACAAGUGUGUCCACUUGUGUGUUUA (((((((((((..((((((((....))))))))..)))))........(((((((....))))))))))))). ( -26.70, z-score = -2.43, R) >droMoj3.scaffold_6359 4222304 71 + 4525533 ACAAGUACAUAAAUAAGCAUGU-UAAGUAUAUAG-AACAUAUGCAGACAAUCAGUCAGCCAAGCAGUCAUAUA ................((.((.-...((((((..-...)))))).(((.....)))...)).))......... ( -8.60, z-score = -0.99, R) >consensus AAA_GUACAUAUAUAUGUAUGUAUAUGUACAUG__CA_GCAUACAUAGACAUGUUUGUCCACUUGUGUGUAUA .......(((((((((((....)))))))))))...........((((((((((......))))))))))... ( -2.24 = -6.05 + 3.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:45 2011