| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,180,391 – 2,180,499 |
| Length | 108 |
| Max. P | 0.751143 |
| Location | 2,180,391 – 2,180,499 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 70.14 |
| Shannon entropy | 0.45202 |
| G+C content | 0.49563 |
| Mean single sequence MFE | -17.99 |
| Consensus MFE | -12.03 |
| Energy contribution | -12.54 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.751143 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2180391 108 - 22422827 CUCCCUUCGCCCCCUUCUCCAUCGUUUCUCCACCCUUUUCGCGCAUUCCCCCCUU----------AUUUUUGCGCCAAUCAAGUUAUCAGAGAGAAGCUCGGACUGAUAAGCAGACAG ........((.......(((...((((((((.........(((((..........----------.....))))).......(....).).)))))))..))).......))...... ( -17.30, z-score = -0.85, R) >droSec1.super_10 1965750 104 - 3036183 CUCCCUUCGCCCUCUUCCCCA--GCUUCUCC--CCUUUUCGCGCAAUCCCUCCUU----------AUUUUUGCGCCAAUCAAGUUAUCAGAGAGAAGCUCGGACUGAUAAGCAGAUAG ........((..((...((.(--(((((((.--.......((((((.........----------....))))))...((.........)))))))))).))...))...))...... ( -23.22, z-score = -2.10, R) >droYak2.chrX 15622423 103 + 21770863 ---------------UCCCCUUCUCCCCCCUUCUUUUUUCGCGCAUUCCCCCCUUUUGCUUUUUUGUUUUUGCGCCAAUCAAGUUAUCAGAGAGAAGCUCGGACUGAUAAGCAGAUAC ---------------(((.(((((((......(((..((.(((((.........................))))).))..)))......).))))))...)))(((.....))).... ( -17.91, z-score = -1.07, R) >droEre2.scaffold_4644 2146152 86 - 2521924 ---------------------CCCCCUUUCCCCUUUUUCAGCGCAUACCCCCUAU-----------UUUUUGCGCCAAUCAAGUUAUCAGAGAGAAGCGCGGACUGAUAAGCAGAUAC ---------------------.......((((.((((((.(((((..........-----------....)))))...((.........)))))))).).)))(((.....))).... ( -13.54, z-score = -0.63, R) >consensus _______________UCCCCAUCGCCUCUCC_CCCUUUUCGCGCAUUCCCCCCUU__________AUUUUUGCGCCAAUCAAGUUAUCAGAGAGAAGCUCGGACUGAUAAGCAGAUAC ........................................(((((.........................)))))..(((...(((((((.(((...)))...)))))))...))).. (-12.03 = -12.54 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:44 2011