| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,159,618 – 2,159,669 |
| Length | 51 |
| Max. P | 0.857367 |
| Location | 2,159,618 – 2,159,669 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 98.69 |
| Shannon entropy | 0.01801 |
| G+C content | 0.46405 |
| Mean single sequence MFE | -11.70 |
| Consensus MFE | -11.82 |
| Energy contribution | -11.60 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.28 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.857367 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2159618 51 + 22422827 CUUAAAAAUGGGCGCUUCGUCCAUAUUGGUCCUGACCAGAUCAGACAUCAG .......(((((((...))))))).(((((....)))))............ ( -12.10, z-score = -1.50, R) >droSec1.super_10 1945434 51 + 3036183 CUUAAAAAUGGGCGCUUCGUCCAUAUUGGUCCUGACCAGAUCAGACAUCAG .......(((((((...))))))).(((((....)))))............ ( -12.10, z-score = -1.50, R) >droSim1.chrX 1518475 51 + 17042790 CUUAAAAAUGGGCGCUUUGUCCAUAUUGGUCCUGACCAGAUCAGACAUCAG .......((((((.....)))))).(((((....)))))............ ( -10.90, z-score = -0.85, R) >consensus CUUAAAAAUGGGCGCUUCGUCCAUAUUGGUCCUGACCAGAUCAGACAUCAG .......(((((((...))))))).(((((....)))))............ (-11.82 = -11.60 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:44 2011