| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,136,747 – 2,136,837 |
| Length | 90 |
| Max. P | 0.985376 |
| Location | 2,136,747 – 2,136,837 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 57.14 |
| Shannon entropy | 0.56859 |
| G+C content | 0.63830 |
| Mean single sequence MFE | -35.17 |
| Consensus MFE | -21.15 |
| Energy contribution | -18.83 |
| Covariance contribution | -2.31 |
| Combinations/Pair | 1.54 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.20 |
| SVM RNA-class probability | 0.985376 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2136747 90 - 22422827 UCGAAUUGGGAUGCUGCUGCUGGUUCGGACUGGGAUGCUGCUGCUGGUUCGGACUGGGAUGCUGCUGCUGGUUCGGACUGGGAGGCUGCU ............((.(((.(..((((((((..(.(.((.(((.(..((....))..).).)).))).)..))))))))..)..))).)). ( -35.20, z-score = -2.79, R) >dp4.chrXL_group1a 152254 79 - 9151740 CCCAGGCGGUAGACUGCGCAGGAUUGGCAUUGGUCUUGAGCAGGCCUGUCGAAC--AGGCAGUGCCUUGGGGCUUGGCCGC--------- ((((((((.(...((((.(((((((......))))))).))))(((((.....)--))))).)))).))))..........--------- ( -35.50, z-score = -1.30, R) >droPer1.super_26 830402 79 + 1349181 CCCAGGCGGUAGACUGCGCAGGAUUGGCAUUGGUCUUGAGCGGGCCUGUCGAAC--AGGCAGUGCCUUGGGGCUUGGCCGC--------- ((((((((.(...((((.(((((((......))))))).))))(((((.....)--))))).)))).))))..........--------- ( -34.80, z-score = -0.93, R) >consensus CCCAGGCGGUAGACUGCGCAGGAUUGGCAUUGGUCUUGAGCAGGCCUGUCGAAC__AGGCAGUGCCUUGGGGCUUGGCCGC_________ .....((((..((..((.(((((((......))))))).))(((((((((.......))))).))))......))..))))......... (-21.15 = -18.83 + -2.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:37 2011