| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,744,687 – 9,744,758 |
| Length | 71 |
| Max. P | 0.608516 |
| Location | 9,744,687 – 9,744,758 |
|---|---|
| Length | 71 |
| Sequences | 6 |
| Columns | 83 |
| Reading direction | forward |
| Mean pairwise identity | 64.39 |
| Shannon entropy | 0.68515 |
| G+C content | 0.38616 |
| Mean single sequence MFE | -11.17 |
| Consensus MFE | -5.43 |
| Energy contribution | -5.55 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.67 |
| Mean z-score | -0.57 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.608516 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9744687 71 + 23011544 ---------AGCAGUUGGUUGG-UUCUUAUGCUCGUAACCAAAAAGCGUAAGAUU--UCUUAACAAAAUCAUUGCAAGCUCUC ---------.(((((.((((((-.(((((((((..(.....)..)))))))))..--.))......)))))))))........ ( -15.00, z-score = -1.66, R) >droEre2.scaffold_4929 10358670 81 + 26641161 AGCAGUUUUACUACCCAAUUUGGCUCGCACGCUCGUUACCAAAAAGUGUCCGAUU--UCUUAACAAAAUCAUUGCAAGCUCUC .(((((........((.....)).(((.(((((...........))))).)))..--.............)))))........ ( -10.60, z-score = 0.07, R) >droYak2.chr2L 12432948 81 + 22324452 AGCAAUUUUACUACCCAAUUUGGUUGGUAUGCUCGUUACCAAAAAGCGUCAGAUU--UCUUUACAAAAUCAUUGCACACUCUC .(((((..(((((.((.....)).)))))((..((((.......)))).))((((--(.......))))))))))........ ( -12.60, z-score = -1.07, R) >droSec1.super_3 5192057 81 + 7220098 AGCCCUUUUAAUACACAACUCGCUUCUUAUGCUCGUAACCAAAAAGCGUAAGAUU--UCUUAACAAAAUCAUUGCAAGCUCUC .....................((((((((((((..(.....)..)))))))))..--......(((.....)))..))).... ( -10.00, z-score = -1.12, R) >droSim1.chr2L 9523095 81 + 22036055 AGCACAUUUACUACACAACUCGCUUCUUAUGCUCGUAACGAAAAAGCGUAAGAUU--UCUUAACCAAAUCAUUGCAAGCUCUC (((.....................(((((((((..(.....)..)))))))))..--.......(((....)))...)))... ( -9.90, z-score = -0.35, R) >droWil1.scaffold_180772 1095940 61 - 8906247 ----------------------AUUCUUAAAGAUGGACUCUAGAUAUAUGAGUUUAACGUGCGCCAAGUGCUAGCUUACUCUC ----------------------.........(.(((((((.........))))))).)(..(.....)..)............ ( -8.90, z-score = 0.74, R) >consensus AGCA_UUUUACUACACAAUUCGCUUCUUAUGCUCGUAACCAAAAAGCGUAAGAUU__UCUUAACAAAAUCAUUGCAAGCUCUC ........................(((((((((...........))))))))).............................. ( -5.43 = -5.55 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:52 2011