| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,112,658 – 2,112,763 |
| Length | 105 |
| Max. P | 0.821010 |
| Location | 2,112,658 – 2,112,763 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 84.85 |
| Shannon entropy | 0.27598 |
| G+C content | 0.51042 |
| Mean single sequence MFE | -39.82 |
| Consensus MFE | -25.74 |
| Energy contribution | -27.52 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.80 |
| SVM RNA-class probability | 0.821010 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2112658 105 + 22422827 --------GGCGCCAUGGAACGCCACAUGGUGCAC--GGAAUUU--GGACUUGACAUCAGCACCUGCU---CAAGGUGUUUUUGGCCAUGGCCAUCUGCCUAUUUAUAGGCAAUGAGCAG --------.(((((((((..((((....))))...--.......--........((..(((((((...---..)))))))..)).)))))))(((.((((((....))))))))).)).. ( -39.20, z-score = -2.09, R) >droSim1.chrX 1475782 105 + 17042790 --------GGCGCCAUGGAACGCCACAUGGUGCAU--GGCAUUU--GGACUUGACAUCAGCACCUGCU---CAAGGUGUUUUUGGCCAUGCACAAUUGCCUAUUUAUAGGCAAUGAGCAG --------(((((((((...((((....)))))))--)))....--........((..(((((((...---..)))))))..))))).(((...((((((((....))))))))..))). ( -43.60, z-score = -3.43, R) >droSec1.super_10 1898489 105 + 3036183 --------GGCGCCAUGGAACGCCACAUGGUGCAU--GGCAUUU--GGACUUGACAUCAGCACCUGCU---CAAGGUGUUUUUGGCCAUGGCCAUUUGCCUAUUUAUAGGCAAUGAGCAG --------.((((((((........))))))))((--(((...(--((......((..(((((((...---..)))))))..)).)))..)))))(((((((....)))))))....... ( -43.00, z-score = -2.81, R) >droYak2.chrX 15553953 105 - 21770863 --------GCCGCCAUGGAACGCCACAUGGUGCAU--GGCAUUU--GGACUUGACAUCAGCACCUGCU---CAAGGUGUUUUUGGCCAUGGCCAUCUGUCUAUUUAUAGGCAAUGAACAC --------(((((((((...((((....)))))))--)))...(--((((..((....(((((((...---..)))))))..((((....)))))).)))))......)))......... ( -39.70, z-score = -2.62, R) >droEre2.scaffold_4644 2077577 105 + 2521924 --------GGCGCCAUGGAACGCCACAUGGUGCAU--GGCAUUU--GGACUUGACAUCAGCACCUGCU---CAAGGUGUUUUUGGCCAUGGCCAUCUGGCUAUUUAUAGGCAGUGAACAG --------.((((((((........))))))))((--(((...(--((......((..(((((((...---..)))))))..)).)))..)))))(((.(((....))).)))....... ( -40.00, z-score = -1.93, R) >droAna3.scaffold_12929 2010711 112 + 3277472 GUUGUAUGUUGGCUAGAGAACGCCACAUGUUGCAUAUGGCAUUUUUGGUCUUGACAUCAGCACCUGCUGCUCAAGGUGUUUUCGGCCAUGG--------CUAUUUAUAGGAGCCCCCCAG .........(((((.((((((((((.(((...))).))))........((((((...((((....)))).)))))).))))))))))).((--------((.........))))...... ( -33.40, z-score = -0.29, R) >consensus ________GGCGCCAUGGAACGCCACAUGGUGCAU__GGCAUUU__GGACUUGACAUCAGCACCUGCU___CAAGGUGUUUUUGGCCAUGGCCAUCUGCCUAUUUAUAGGCAAUGAGCAG ...........(((((((....((....(((((.....)))))...))......((..(((((((........)))))))..)).)))))))....((((((....))))))........ (-25.74 = -27.52 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:34 2011