| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,093,075 – 2,093,135 |
| Length | 60 |
| Max. P | 0.833212 |
| Location | 2,093,075 – 2,093,135 |
|---|---|
| Length | 60 |
| Sequences | 4 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 68.87 |
| Shannon entropy | 0.50044 |
| G+C content | 0.45669 |
| Mean single sequence MFE | -13.30 |
| Consensus MFE | -9.15 |
| Energy contribution | -9.15 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.833212 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2093075 60 + 22422827 UUACUAGUCGAUUCCCCGACUGGAAUGUGCAAC-ACCCCUCGAAUCGGGUUUCAAUUAAUC ...(((((((......)))))))..........-((((........))))........... ( -13.90, z-score = -1.35, R) >droAna3.scaffold_12929 1986122 61 + 3277472 UUAUGAUUCAACCCUUUGGUUUUAGUUUUCAAUUACGCCAUGACUCUCCGUCCAGUGACUU .........((((....))))..............(((...(((.....)))..))).... ( -5.10, z-score = 0.75, R) >droSec1.super_10 1876359 60 + 3036183 UUUCUAGUCGAUUCCCCGACUGGAAUGAGUAAC-ACCCCCCGAAUCGGGUUUCAAUUAAGG .(((((((((......)))))))))((((....-((((........))))))))....... ( -17.10, z-score = -1.69, R) >droSim1.chrX 1467345 60 + 17042790 UUUCUAGUCGAUUCCCCGACUGGAAUGAGUAAC-ACCCCCCGAAUCGGGUUUCAAUUAAGG .(((((((((......)))))))))((((....-((((........))))))))....... ( -17.10, z-score = -1.69, R) >consensus UUACUAGUCGAUUCCCCGACUGGAAUGAGCAAC_ACCCCCCGAAUCGGGUUUCAAUUAAGG .(((((((((......)))))))))...........(((.......)))............ ( -9.15 = -9.15 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:31 2011