Locus 12773

Sequence ID dm3.chrX
Location 2,089,997 – 2,090,112
Length 115
Max. P 0.955761
window17559

overview

Window 9

Location 2,089,997 – 2,090,112
Length 115
Sequences 3
Columns 115
Reading direction forward
Mean pairwise identity 89.28
Shannon entropy 0.14953
G+C content 0.51524
Mean single sequence MFE -37.40
Consensus MFE -31.55
Energy contribution -32.67
Covariance contribution 1.11
Combinations/Pair 1.03
Mean z-score -2.44
Structure conservation index 0.84
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.62
SVM RNA-class probability 0.955761
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 2089997 115 + 22422827
GGCAGCUGACACUAUUCCUGCCCACAGUACUCAUAGUUAAGGAGUUGUGAACUGGAAAUGGAUCGCAUACUACCCACGAAUGGGGUGAAUCACUCAAUUCGACUGCAUGCCCAAG
((((((.(...(((((((.(..((((..((((.........))))))))..).)).)))))...............(((((.(((((...))))).))))).).)).)))).... ( -29.00, z-score =  -0.22, R)
>droSim1.chrX 1463850 115 + 17042790
GGCAGCAGGCACUAUUCCUUCCCACAGUACACAUAGUUAAGGAGUUGAGCACUGGAAAUGGAUCGCAUACUACCCACGAAAGGGGUGAAUCACUCGAUUCGCCUGCAUGCCCCUG
((((((((((.(.(((((((..(............)..))))))).)............((((((.....(((((.(....)))))).......)))))))))))).)))).... ( -39.90, z-score =  -2.89, R)
>droSec1.super_10 1873273 108 + 3036183
GGCAGCAGGCACUACUCCUUCCCACA-------UAGUUAAGGAGUUGAGCACUGGAAAUGGAUCGCAUACUACCCACGAAAGGGGUGAAUCACUCGAUUCGCCUGCAUGCCCCUG
((((((((((.(.(((((((..(...-------..)..))))))).)............((((((.....(((((.(....)))))).......)))))))))))).)))).... ( -43.30, z-score =  -4.21, R)
>consensus
GGCAGCAGGCACUAUUCCUUCCCACAGUAC_CAUAGUUAAGGAGUUGAGCACUGGAAAUGGAUCGCAUACUACCCACGAAAGGGGUGAAUCACUCGAUUCGCCUGCAUGCCCCUG
((((((((((.(.(((((((..(............)..))))))).)............((((((.....(((((.(....)))))).......)))))))))))).)))).... (-31.55 = -32.67 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:30 2011