Locus 12771

Sequence ID dm3.chrX
Location 2,076,621 – 2,076,679
Length 58
Max. P 0.699846
window17556

overview

Window 6

Location 2,076,621 – 2,076,679
Length 58
Sequences 5
Columns 58
Reading direction reverse
Mean pairwise identity 86.90
Shannon entropy 0.22626
G+C content 0.45335
Mean single sequence MFE -13.46
Consensus MFE -11.10
Energy contribution -12.10
Covariance contribution 1.00
Combinations/Pair 1.12
Mean z-score -1.55
Structure conservation index 0.82
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.45
SVM RNA-class probability 0.699846
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 2076621 58 - 22422827
AACGGUUGCGCUAAAAUUAUAGCUAAGUCUUGUCUAAGCUUCCGUUUGGCCUGAUCUC
...(((((.((((((.....((((.((......)).))))....)))))).))))).. ( -14.20, z-score =  -2.04, R)
>droSim1.chrX 1452913 58 - 17042790
AAUGGUUGCGCUAAAAUUGUAGCUAAGUCUUGUCUAAGCUUCCGUUUGGCCUGAUCUC
...(((((.((((((.....((((.((......)).))))....)))))).))))).. ( -13.90, z-score =  -2.16, R)
>droSec1.super_10 1860147 58 - 3036183
AAUGGUUGCGCUAAAAUUGUAGCUAAGUCUUGUCUAAGCUUCCGUUUGGCCUGAUCUC
...(((((.((((((.....((((.((......)).))))....)))))).))))).. ( -13.90, z-score =  -2.16, R)
>droYak2.chrX 15523497 55 + 21770863
AAUGGUGGCGCUAAAAUUCUAGCUAAGUCUUGUCUAAGCUGCCCGAUGA--UGGCCC-
...((..((((((......))))..((......))..))..))......--......- ( -11.30, z-score =   0.13, R)
>droEre2.scaffold_4644 2039646 58 - 2521924
AACGGUUGCGCUAAAAUUCUAGCUAAGUCUUGUCUAAGCUGUCCGAUGGCCUGACCUC
...(((((.((((......(((((.((......)).))))).....)))).))))).. ( -14.00, z-score =  -1.53, R)
>consensus
AAUGGUUGCGCUAAAAUUCUAGCUAAGUCUUGUCUAAGCUUCCGUUUGGCCUGAUCUC
...(((((.((((((.....((((.((......)).))))....)))))).))))).. (-11.10 = -12.10 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:28 2011