| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,074,891 – 2,074,949 |
| Length | 58 |
| Max. P | 0.978555 |
| Location | 2,074,891 – 2,074,949 |
|---|---|
| Length | 58 |
| Sequences | 7 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 63.55 |
| Shannon entropy | 0.76707 |
| G+C content | 0.42983 |
| Mean single sequence MFE | -11.17 |
| Consensus MFE | -4.92 |
| Energy contribution | -4.04 |
| Covariance contribution | -0.87 |
| Combinations/Pair | 2.29 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.00 |
| SVM RNA-class probability | 0.978555 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2074891 58 - 22422827 GAACUAAUUUCUAUCACUUUUUGGCGGUGAAAAACUACACCUGCCCAUCACUGCGCCA .....................((((((((........)))).((........)))))) ( -10.80, z-score = -2.16, R) >droSim1.chrX 1451188 58 - 17042790 GAACUAAUUUCUAGCACUUUUUGGCGGUGAAAAACUACACCUGCCCAUCACUGCGUCA .............(((......(((((((........)))).)))......))).... ( -12.40, z-score = -1.98, R) >droSec1.super_10 1858416 58 - 3036183 GAACUAAUUUCUAGCACUUUUUGGCGGUGAAAAACUACACCUGCCCAUCACUGCGUCA .............(((......(((((((........)))).)))......))).... ( -12.40, z-score = -1.98, R) >droYak2.chrX 15521751 58 + 21770863 AAACUAUGGCUUAUCAUUUUUUGGCGGUGAAAAGCUAUACUCGCCCAUCACUGCGCCA ......((((....((.....))(((((((...((.......))...))))))))))) ( -16.00, z-score = -2.28, R) >droEre2.scaffold_4644 2037903 58 - 2521924 UAACUUAAGUCGAGCUGGAUUUGGCGGUAAACAGCUAUACCUGCCCAUCACUGCGCCA .............((..(((..(((((((........)))).))).)))...)).... ( -12.10, z-score = 0.26, R) >droAna3.scaffold_12929 1965723 53 - 3277472 CAUUAAUCUACAAACAAAGGCUGAUUUUUAAAAA--AUAACGGUCUUUUGCGACA--- ...............((((((((((((.....))--))..)))))))).......--- ( -5.60, z-score = -0.87, R) >droMoj3.scaffold_6328 2792540 58 - 4453435 GAGCCCGCUUCUAUAACUUUUUGGCAAUUGUGAUUUAUAACUGUCCAACGCUCUGCUA ((((..(((.............)))..(((.(((........)))))).))))..... ( -8.92, z-score = -0.82, R) >consensus GAACUAAUUUCUAGCACUUUUUGGCGGUGAAAAACUAUACCUGCCCAUCACUGCGCCA ......................(((((((........))).))))............. ( -4.92 = -4.04 + -0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:27 2011