| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,056,714 – 2,056,815 |
| Length | 101 |
| Max. P | 0.535167 |
| Location | 2,056,714 – 2,056,815 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.41 |
| Shannon entropy | 0.24653 |
| G+C content | 0.53606 |
| Mean single sequence MFE | -25.35 |
| Consensus MFE | -19.84 |
| Energy contribution | -20.15 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.535167 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2056714 101 + 22422827 ACGAGUGUAAACAAACCGUCG-CAACGGC-----AUUCCAUUCCGUGUGAUUCCAGCGCUGGUUGUUUACAUCCUGACCGCUCAGCUCCACCUCAUCCAGCUCCAUU------------- ..((((((((((((.(((.((-(...((.-----((..(((...)))..)).)).))).)))))))))))...((((....))))..............))))....------------- ( -24.70, z-score = -1.80, R) >droSec1.super_10 1840441 106 + 3036183 ACGAGUGUAAACAAACCGUCG-CAACGGCGCAACAUUCCAUUCCGUGUGAUUCCAGCGCUGGUUGUUUACAUCCUGACCGCUCAGCUCCACCUCAUCCAGCUCCAUU------------- ..((((((((((((.(((.((-(...((....((((........))))....)).))).)))))))))))...((((....))))..............))))....------------- ( -24.80, z-score = -1.22, R) >droYak2.chrX 15503062 115 - 21770863 UCGAGUGUAAACAAACCGUCGGCCACGGC-----AUUCCAUUCGGUGUGAUUCCAGCGCUGGUUGUUUACAUCCUGACCGCUCAGCUCCACUCCUCUCCACCACUUCACUCCUCCGCAUC ..((((((((((((.((((((....))))-----.........(((((.......)))))))))))))))...((((....))))....))))........................... ( -25.70, z-score = -0.89, R) >droEre2.scaffold_4644 2019858 101 + 2521924 UCGAGUGUAAACAAACCGUCG-CAACGGC-----AUUCCAUUCCGUGUGAUUCCAGCGCUGGUUGUUUACAUCCUGACCGCUCAGCCUCAGCUCACCCAGCUCCAUU------------- ..((((((((((((.(((.((-(...((.-----((..(((...)))..)).)).))).))))))))))))..((((....)))).)))((((.....)))).....------------- ( -26.20, z-score = -1.89, R) >consensus ACGAGUGUAAACAAACCGUCG_CAACGGC_____AUUCCAUUCCGUGUGAUUCCAGCGCUGGUUGUUUACAUCCUGACCGCUCAGCUCCACCUCACCCAGCUCCAUU_____________ ..((((((((((((.((((((....))))...............((((.......)))).))))))))))...((((....))))..............))))................. (-19.84 = -20.15 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:23 2011