| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,034,691 – 2,034,791 |
| Length | 100 |
| Max. P | 0.755750 |
| Location | 2,034,691 – 2,034,791 |
|---|---|
| Length | 100 |
| Sequences | 7 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 66.44 |
| Shannon entropy | 0.65575 |
| G+C content | 0.47970 |
| Mean single sequence MFE | -22.49 |
| Consensus MFE | -9.61 |
| Energy contribution | -10.37 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.755750 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2034691 100 - 22422827 ---------UUUAGCUUGUCUCUGUCCUAUUCUUCUCCGCAGGCGGCACAAUGGUGCUAUCUCUUUUGCACCCCAU-AAAAAACCUUUUCCGGUGGUGCGCCCAUUUUUU ---------....((((((...................))))))(((((....))))).........(((((((..-((((....))))..)).)))))........... ( -22.61, z-score = -1.28, R) >droAna3.scaffold_13117 5193817 92 - 5790199 ------------CCCAUAUAGUUGUCCCUUUCACACCUACCUGUGAUGGCAUAAUGCCAUCUCAGUCGCACGCCUAACAAUAA----UUUCGGC--UGCACCCAUUUUUU ------------......(((.(((.......))).))).(((.((((((.....)))))).)))..(((.(((.........----....)))--)))........... ( -22.12, z-score = -3.67, R) >droEre2.scaffold_4644 1997912 100 - 2521924 ---------GCCAGCUUGUCUCUAUCCCUUUCUCCCUCGCAGGCGGCACCAUGGUGCUAUCUUUGUUGCACCCCAU-AAAAAACCUCUUUCGGUGGUGUGCCCAUUUUUU ---------....((((((...................))))))(((((...(((((..........)))))((((-..(((.....)))..)))).)))))........ ( -24.21, z-score = -1.54, R) >droYak2.chrX 15481393 100 + 21770863 ---------CCCAGCUUGUCUCUGUCCCUUUCU-CUCCCCAGGCGGCACAAUGGUGCUGUCUCUGUUGCACUCCAUAAAAAAACCUCUUUCGGUGAUGCGCCCAUUUUUU ---------....((.((((.............-......(((((((((....)))))))))....................(((......))))))).))......... ( -18.40, z-score = -0.01, R) >droSec1.super_10 1818250 101 - 3036183 ---------UUCAGCUUGCCUCUGUCCUUUUCUUCUCCGCAGGCGGCACAAUGGUGCUAUCUCUGUUGCACCCCAUAAAAAAACCUUUUCCGGUGGUGCGCCCAUUUUUU ---------....((((((...................))))))(((((....))))).........(((((((..((((.....))))..)).)))))........... ( -24.31, z-score = -1.12, R) >droSim1.chrX 1416756 101 - 17042790 ---------UUCAGCUUGCCUUUGUCCUUUUCUUCUCCGCAGGCGGCACAAUGGUGCUAUCUCUGUUGCACCCCAUAAAAAAACCUUUUCCGGUGGUGCGCCCAUUUUUU ---------....((((((...................))))))(((((....))))).........(((((((..((((.....))))..)).)))))........... ( -24.31, z-score = -1.04, R) >droWil1.scaffold_180698 5834052 109 + 11422946 GUUUUUCCUUUAUAACCAAAGUUGAAUGGACCAUGGCAGUGAGCGAGAGAAUGUCGCAGCCGGUUCAAUAAUUUAU-UAACAACAAAUCGCGGCACUGCGCCCACUUUUU ....................((((..((((((..(((.((((.(....)....)))).))))))))).(((....)-)).)))).....(.(((.....))))....... ( -21.50, z-score = 0.55, R) >consensus _________UUCAGCUUGUCUCUGUCCCUUUCUUCUCCGCAGGCGGCACAAUGGUGCUAUCUCUGUUGCACCCCAUAAAAAAACCUUUUCCGGUGGUGCGCCCAUUUUUU .........................................((((.(((...(((((..........)))))..........(((......))).)))))))........ ( -9.61 = -10.37 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:21 2011