| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,028,637 – 2,028,749 |
| Length | 112 |
| Max. P | 0.650245 |
| Location | 2,028,637 – 2,028,749 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 95.06 |
| Shannon entropy | 0.08343 |
| G+C content | 0.42249 |
| Mean single sequence MFE | -26.79 |
| Consensus MFE | -25.67 |
| Energy contribution | -25.67 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.650245 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2028637 112 + 22422827 CAUAAAAAGCAUGAGUGCAAAAAAGACAGAAAAAGGAGCGAAAUGGGUUAUAAAAGCCGGUAAAAGCAUUUUGGCAACCCUCAUGUCGCUGCUACCCCGUAAA-------AGAAAGGGA- ........(((....)))...............((.(((((...(((((.(((((((........)).)))))..))))).....))))).))..(((.....-------.....))).- ( -26.20, z-score = -1.25, R) >droSim1.chrX 1410926 112 + 17042790 CAUAAAAAGCAUGAGUGCAAAAAAGACAGAAAAAGGAGCGAAAUGGGUUAUAAAAGCCGGUAAAAGCAUUUUGGCAACCCUCAUGUCGCUGCUACCCCGUAAA-------AGAAAGGGA- ........(((....)))...............((.(((((...(((((.(((((((........)).)))))..))))).....))))).))..(((.....-------.....))).- ( -26.20, z-score = -1.25, R) >droSec1.super_10 1812183 112 + 3036183 CAUAAAAAGCAUGAGUGCAAAAAAGACAGAAAAAGGAGCGAAAUGGGUUAUAAAAGCCGGUAAAAGCAUUUUGGCAACCCUCAUGUCGCUGCUACCCCGUAAA-------AGAAAGGGA- ........(((....)))...............((.(((((...(((((.(((((((........)).)))))..))))).....))))).))..(((.....-------.....))).- ( -26.20, z-score = -1.25, R) >droEre2.scaffold_4644 1991784 120 + 2521924 CAUAAAAAGCAUGAGUGCAAAGAAGACAGAAAAAGGAGCGAAAUGGGUUAUAAAAGCCGGUAAAAGCAUUUUGGCAACCCUCAUGUCGCUGCUACCCCGUAAACCGUAAAAGAAAGGGGA ........(((....)))...............((.(((((...(((((.(((((((........)).)))))..))))).....))))).)).((((.................)))). ( -29.13, z-score = -1.32, R) >droYak2.chrX 15475312 119 - 21770863 CAUAAAAAGCAUGAGUGCAAAGAAGACAGAAAAAGGAGCGAAAUGGGUUAUAAAAGCCGGUAAAAGCAUUUUGGCAACCCUCAUGUCGCUGCUACCCCGUAAACUGUUAAAGAAAGGGA- ........(((....)))...............((.(((((...(((((.(((((((........)).)))))..))))).....))))).))..(((.....((.....))...))).- ( -26.20, z-score = -0.55, R) >consensus CAUAAAAAGCAUGAGUGCAAAAAAGACAGAAAAAGGAGCGAAAUGGGUUAUAAAAGCCGGUAAAAGCAUUUUGGCAACCCUCAUGUCGCUGCUACCCCGUAAA_______AGAAAGGGA_ ........(((....)))...............((.(((((...(((((.(((((((........)).)))))..))))).....))))).))..(((.................))).. (-25.67 = -25.67 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:20 2011