| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,019,372 – 2,019,471 |
| Length | 99 |
| Max. P | 0.813052 |
| Location | 2,019,372 – 2,019,471 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 75.56 |
| Shannon entropy | 0.38185 |
| G+C content | 0.33020 |
| Mean single sequence MFE | -19.80 |
| Consensus MFE | -11.23 |
| Energy contribution | -13.72 |
| Covariance contribution | 2.50 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.813052 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2019372 99 - 22422827 ----------UAUAUUUUUCACCGAAUAAUAGUAUAAUC--AUUAGUAGAGUUACGUCAUUCGUACCACAGGUAUGAAACGUAACAAUCUAUUGCAGUCUCAGAAUGUUAA ----------................(((((........--..((((((((((((((..((((((((...)))))))))))))))..)))))))...........))))). ( -21.20, z-score = -2.80, R) >droSim1.chrX_random 1190604 92 - 5698898 ----------UAUA-UUUCCACCGCAUAAUUGUAUAAUC--AUUAGUAGAGUUACGUCAUUCGUACCACAGGUAUGAAUCGCAACAAUCUAUUGCAGU------CUGUUUA ----------....-........((((((((.(((....--....))).))))).((.(((((((((...))))))))).))..........)))...------....... ( -16.80, z-score = -1.54, R) >droSec1.super_10 1804400 99 - 3036183 ----------UAUAUUUUCCACCGCAUAAUGGUAUAAUC--AUUAGUAGAGUUACGUCAUUCGUACCACAGGUAUGAAUCGUAACAAUCUAUUGCAGUCUCAGACUGUUUA ----------..........((((.....))))......--...((((((((((((..(((((((((...)))))))))))))))..))))))((((((...))))))... ( -26.20, z-score = -3.92, R) >droEre2.scaffold_4604 8728 111 - 11395 UUUCACCGAUUACUGUCUAAAUAGUAUCUUAUGCGAAUCGUAUUGGUAAAGUUACGUGAUUCGUACCUCAGAUAUAAAUCAUAAAAAUCUAUUCAAGUUUCAGACUGUUUA ...........((.((((((((.((((((..(((((((((..(..........)..)))))))))....)))))).....(((......)))....)))).)))).))... ( -15.00, z-score = 0.41, R) >consensus __________UAUAUUUUCCACCGCAUAAUAGUAUAAUC__AUUAGUAGAGUUACGUCAUUCGUACCACAGGUAUGAAUCGUAACAAUCUAUUGCAGUCUCAGACUGUUUA ............................................((((((((((((..(((((((((...)))))))))))))))..))))))((((((...))))))... (-11.23 = -13.72 + 2.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:19 2011