| Sequence ID | dm3.chrX |
|---|---|
| Location | 2,016,234 – 2,016,332 |
| Length | 98 |
| Max. P | 0.517532 |
| Location | 2,016,234 – 2,016,332 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 73.41 |
| Shannon entropy | 0.45110 |
| G+C content | 0.36632 |
| Mean single sequence MFE | -24.16 |
| Consensus MFE | -10.49 |
| Energy contribution | -12.27 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.517532 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 2016234 98 - 22422827 GCUGACAAGUGACCUGCUUUAG-GUGUUG-GUGUGC---AUGCACAUAUGAAAAACAGUGCACU-UUUAGUGGGUCACGA--AUCAUGAACAAAUUA--AAAUAUUUA---------- ..(((...((((((..((..((-((((..-(((((.---...)))))............)))))-)..))..))))))..--.)))...........--.........---------- ( -29.34, z-score = -2.59, R) >droAna3.scaffold_13117 5171253 118 - 5790199 CCAGAGAGGUACUCUCCUAAAAUACAUAGCAUAUGCAAAAAAAAAAUAAAAAGAAAAAGAGACUAUUUAUUGGGUCAGUGUUAUCUGGGACAGGCUAUUAAAAAUUCAAUAUAUCUGA (((((.(((......)))..(((((...((....))........................((((........)))).))))).)))))..((((.(((............))))))). ( -19.10, z-score = -0.45, R) >droEre2.scaffold_4604 4892 98 - 11395 UCUGACAAGUGACCUCCUUUAA-GCAUUG-GUGUGC---AUGCACAUAUGCAAAACAUUGCACU-UUUAGUGGGUCACGA--ACCAUCAUCAAAUUA--AAAUAUUUA---------- ........((((((..((..((-(.....-(((((.---...))))).(((((....)))))))-)..))..))))))..--...............--.........---------- ( -24.70, z-score = -2.21, R) >droYak2.chrX 15463527 98 + 21770863 UCUGACAAGUGACCUCUUUUAG-GCACUG-GUGUGC---AUGCACAUAUGCAAAACCGUGCACU-UUUAGUGGGUCACGA--ACCAUCAUCAAAUUA--AAAUAUUUA---------- ........(((((((((...((-((((.(-((.(((---(((....))))))..))))))).))-...)).)))))))..--...............--.........---------- ( -28.40, z-score = -2.88, R) >droSec1.super_10 1800828 96 - 3036183 UCUGACAAGUGACCUCCCUUAG-ACGUCG---GUGC---UUGCACAUAUGCAUAACAGUGCACU-UUUAGUGGGUCACAA--AUCUUCAACAAAUUA--AAAUAUUUA---------- ........(((((((...((((-(.((((---.((.---.((((....))))...)).)).)).-))))).)))))))..--...............--.........---------- ( -19.30, z-score = -0.84, R) >droSim1.chrX_random 1186718 96 - 5698898 UCUGACAAGUGACCUCUUUUAG-GCGUUG---GUGC---AUGCACAUAUGCAUAACAGUGCACU-UUUAGUGGGUCACAA--AUCUUCAACAAAUUA--AAAUAUUUA---------- ........(((((((((...((-((((((---((((---(((....)))))))..)))))).))-...)).)))))))..--...............--.........---------- ( -24.10, z-score = -2.14, R) >consensus UCUGACAAGUGACCUCCUUUAG_GCAUUG_GUGUGC___AUGCACAUAUGCAAAACAGUGCACU_UUUAGUGGGUCACGA__AUCAUCAACAAAUUA__AAAUAUUUA__________ ........((((((................((((((.....)))))).............((((....))))))))))........................................ (-10.49 = -12.27 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:18 2011