| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,995,998 – 1,996,048 |
| Length | 50 |
| Max. P | 0.761502 |
| Location | 1,995,998 – 1,996,048 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 92.00 |
| Shannon entropy | 0.13991 |
| G+C content | 0.51200 |
| Mean single sequence MFE | -14.06 |
| Consensus MFE | -11.88 |
| Energy contribution | -12.08 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.761502 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1995998 50 - 22422827 GGCGCCACUUAAUUGUAGCCAUCCUGUGGACGCCACUUACGGUUUAUUCA ((((((((.....((....))....)))).))))................ ( -13.30, z-score = -1.58, R) >droEre2.scaffold_4644 1968848 50 - 2521924 GGCGCCACUUAAUUGUGCCCAUCCUGUGGACGCCACUUUCAGUUUACUCA ((((((((.....((....))....)))).))))................ ( -13.30, z-score = -2.18, R) >droYak2.chrX 15441957 50 + 21770863 GGAGCCACUUAAUUGCGGCCAUCCUGUGGCCGCCACUUACAGGUUAUUCA ..((((........((((((((...))))))))........))))..... ( -17.09, z-score = -2.09, R) >droSec1.super_10 1780357 50 - 3036183 GGCGCCACUUAAUUGUAGCCAUCCUGUGGACGCCACUUACGGUUUAUUCA ((((((((.....((....))....)))).))))................ ( -13.30, z-score = -1.58, R) >droSim1.chrX 1404689 50 - 17042790 GGCGCCACUUAAUUGUAGCCAUCCUGUGGACGCCACUUACGGUUUAUUCA ((((((((.....((....))....)))).))))................ ( -13.30, z-score = -1.58, R) >consensus GGCGCCACUUAAUUGUAGCCAUCCUGUGGACGCCACUUACGGUUUAUUCA ((((((((.....((....))....)))).))))................ (-11.88 = -12.08 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:16 2011