| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,732,560 – 9,732,654 |
| Length | 94 |
| Max. P | 0.959739 |
| Location | 9,732,560 – 9,732,654 |
|---|---|
| Length | 94 |
| Sequences | 8 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 91.52 |
| Shannon entropy | 0.15760 |
| G+C content | 0.29188 |
| Mean single sequence MFE | -17.33 |
| Consensus MFE | -15.20 |
| Energy contribution | -15.20 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.925917 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9732560 94 + 23011544 GAAAAACAUACACAAAACGAAAAUCAAAAACGAAAUUUCGUUCCUGGCAAAGGAUCUUUGUUUUCGUUUUAA-CUUUGAUUCUUUUCUUUAUUCA--------------- (((((.((.....((((((((((.((((.((((....))))((((.....))))..))))))))))))))..-...))....)))))........--------------- ( -17.20, z-score = -2.07, R) >droPer1.super_1 8371582 93 - 10282868 GAAAAACAUACACAAAACGAAAAUCAAAAACGAAAUUUCGUUCCUGGCAAAGGAUCUUCGUUUUCGUUUUACUCUUUGAUUCUUUUCUUUUCA----------------- (((((........(((((((((((.....((((....))))((((.....)))).....))))))))))).......((......))))))).----------------- ( -17.00, z-score = -1.98, R) >dp4.chr4_group3 11256444 93 - 11692001 GAAAAACAUACACAAAACGAAAAUCAAAAACGAAAUUUCGUUCCUGGCAAAGGAUCUUCGUUUUCGUUUUACUCUUUGAUUCUUUUCUUUUCA----------------- (((((........(((((((((((.....((((....))))((((.....)))).....))))))))))).......((......))))))).----------------- ( -17.00, z-score = -1.98, R) >droAna3.scaffold_12943 1161702 109 + 5039921 GAAAAACAUACACAAAACGAAAAUCAAAAACGAAAUUUCGUUCCUGGCAAAGGAUCUUCGUUUUCGUUUUAA-CAUUGAUUCUUUUCAUUAAUUUUGUCAUUUUCAUUUU ((((((((.....(((((((((((.....((((....))))((((.....)))).....)))))))))))..-...(((......))).......)))..)))))..... ( -18.60, z-score = -1.76, R) >droEre2.scaffold_4929 10346123 94 + 26641161 GAAAAACAUACACAAAACGAAAAUCAAAAACGAAAUUUCGUUCCUGGCAAAGGAUCUUUGUUUUCGUUUUAA-CUUUGAUUCUUUUCUUUAUUCA--------------- (((((.((.....((((((((((.((((.((((....))))((((.....))))..))))))))))))))..-...))....)))))........--------------- ( -17.20, z-score = -2.07, R) >droYak2.chr2L 12420404 94 + 22324452 GAAAAACAUACACAAAACGAAAAUCAAAAACGAAAUUUCGUUCCUGGCAAAGGAUCUUUGUUUUCGUUUUAA-CUUUGAUUCUUUUCUUUAUUCA--------------- (((((.((.....((((((((((.((((.((((....))))((((.....))))..))))))))))))))..-...))....)))))........--------------- ( -17.20, z-score = -2.07, R) >droSec1.super_3 5179986 94 + 7220098 GAAAAACAUACACAAAACGAAAAUCAAAAACGAAAUUUCGUUCCUGGCAAAGGAUCUUUGUUUUCGUUUUAA-CUUUGAUUCUUUUCUUUAUUCA--------------- (((((.((.....((((((((((.((((.((((....))))((((.....))))..))))))))))))))..-...))....)))))........--------------- ( -17.20, z-score = -2.07, R) >droSim1.chr2L 9511436 94 + 22036055 GAAAAACAUACACAAAACGAAAAUCAAAAACGAAAUUUCGUUCCUGGCAAAGGAUCUUUGUUUUCGUUUUAA-CUUUGAUUCUUUUCUUUAUUCA--------------- (((((.((.....((((((((((.((((.((((....))))((((.....))))..))))))))))))))..-...))....)))))........--------------- ( -17.20, z-score = -2.07, R) >consensus GAAAAACAUACACAAAACGAAAAUCAAAAACGAAAUUUCGUUCCUGGCAAAGGAUCUUUGUUUUCGUUUUAA_CUUUGAUUCUUUUCUUUAUUCA_______________ (((((.((.....(((((((((((.....((((....))))((((.....)))).....)))))))))))......))....)))))....................... (-15.20 = -15.20 + 0.00)
| Location | 9,732,560 – 9,732,654 |
|---|---|
| Length | 94 |
| Sequences | 8 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 91.52 |
| Shannon entropy | 0.15760 |
| G+C content | 0.29188 |
| Mean single sequence MFE | -20.57 |
| Consensus MFE | -20.30 |
| Energy contribution | -20.06 |
| Covariance contribution | -0.23 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.959739 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9732560 94 - 23011544 ---------------UGAAUAAAGAAAAGAAUCAAAG-UUAAAACGAAAACAAAGAUCCUUUGCCAGGAACGAAAUUUCGUUUUUGAUUUUCGUUUUGUGUAUGUUUUUC ---------------........((((((........-.((((((((((((((((...))))).(((((((((....))))))))).)))))))))))......)))))) ( -20.66, z-score = -1.90, R) >droPer1.super_1 8371582 93 + 10282868 -----------------UGAAAAGAAAAGAAUCAAAGAGUAAAACGAAAACGAAGAUCCUUUGCCAGGAACGAAAUUUCGUUUUUGAUUUUCGUUUUGUGUAUGUUUUUC -----------------......((((((...((.....((((((((((((((((...))))).(((((((((....))))))))).)))))))))))))....)))))) ( -19.90, z-score = -1.14, R) >dp4.chr4_group3 11256444 93 + 11692001 -----------------UGAAAAGAAAAGAAUCAAAGAGUAAAACGAAAACGAAGAUCCUUUGCCAGGAACGAAAUUUCGUUUUUGAUUUUCGUUUUGUGUAUGUUUUUC -----------------......((((((...((.....((((((((((((((((...))))).(((((((((....))))))))).)))))))))))))....)))))) ( -19.90, z-score = -1.14, R) >droAna3.scaffold_12943 1161702 109 - 5039921 AAAAUGAAAAUGACAAAAUUAAUGAAAAGAAUCAAUG-UUAAAACGAAAACGAAGAUCCUUUGCCAGGAACGAAAUUUCGUUUUUGAUUUUCGUUUUGUGUAUGUUUUUC .....(((((..(((.......(((......)))...-.((((((((((((((((...))))).(((((((((....))))))))).))))))))))))))....))))) ( -21.50, z-score = -1.14, R) >droEre2.scaffold_4929 10346123 94 - 26641161 ---------------UGAAUAAAGAAAAGAAUCAAAG-UUAAAACGAAAACAAAGAUCCUUUGCCAGGAACGAAAUUUCGUUUUUGAUUUUCGUUUUGUGUAUGUUUUUC ---------------........((((((........-.((((((((((((((((...))))).(((((((((....))))))))).)))))))))))......)))))) ( -20.66, z-score = -1.90, R) >droYak2.chr2L 12420404 94 - 22324452 ---------------UGAAUAAAGAAAAGAAUCAAAG-UUAAAACGAAAACAAAGAUCCUUUGCCAGGAACGAAAUUUCGUUUUUGAUUUUCGUUUUGUGUAUGUUUUUC ---------------........((((((........-.((((((((((((((((...))))).(((((((((....))))))))).)))))))))))......)))))) ( -20.66, z-score = -1.90, R) >droSec1.super_3 5179986 94 - 7220098 ---------------UGAAUAAAGAAAAGAAUCAAAG-UUAAAACGAAAACAAAGAUCCUUUGCCAGGAACGAAAUUUCGUUUUUGAUUUUCGUUUUGUGUAUGUUUUUC ---------------........((((((........-.((((((((((((((((...))))).(((((((((....))))))))).)))))))))))......)))))) ( -20.66, z-score = -1.90, R) >droSim1.chr2L 9511436 94 - 22036055 ---------------UGAAUAAAGAAAAGAAUCAAAG-UUAAAACGAAAACAAAGAUCCUUUGCCAGGAACGAAAUUUCGUUUUUGAUUUUCGUUUUGUGUAUGUUUUUC ---------------........((((((........-.((((((((((((((((...))))).(((((((((....))))))))).)))))))))))......)))))) ( -20.66, z-score = -1.90, R) >consensus _______________UGAAUAAAGAAAAGAAUCAAAG_UUAAAACGAAAACAAAGAUCCUUUGCCAGGAACGAAAUUUCGUUUUUGAUUUUCGUUUUGUGUAUGUUUUUC .......................((((((...((.....((((((((((((((((...))))).(((((((((....))))))))).)))))))))))))....)))))) (-20.30 = -20.06 + -0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:50 2011