| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,992,627 – 1,992,867 |
| Length | 240 |
| Max. P | 0.731040 |
| Location | 1,992,627 – 1,992,747 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.41 |
| Shannon entropy | 0.07652 |
| G+C content | 0.53385 |
| Mean single sequence MFE | -34.46 |
| Consensus MFE | -29.17 |
| Energy contribution | -28.95 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525572 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1992627 120 + 22422827 UACGCUUUAAAUUGGAUUGUGCAAAACACGCACAUGUACUCAUCCAUAUGCACGUAUUUGGCUGCAGGUACUUGGCCGCCUGUUCGCCCCCACUUGCCGCCACUCUAACACCAAUGCUCG ...((.......((((((((((.......))))).......)))))...))..(((((((((.((((((....(((.........)))...)))))).))))..........)))))... ( -28.01, z-score = -0.28, R) >droSec1.super_10 1777102 118 + 3036183 UACGCUUUAAAUUGGAUUGUGCAAA-CACGCACAUGUACUCAUCCAUAUGCACGUAUUUGGCUGCAGGUACUUGGCCGCCCGUCCGGCCC-ACCUGCCGCCACUCUAACGCACAUGCUCG ...((.......((((((((((...-...))))).......))))).(((..(((...((((.((((((....(((((......))))).-)))))).)))).....)))..)))))... ( -38.71, z-score = -2.51, R) >droSim1.chrX 1401399 118 + 17042790 UACGCUUUAAAUUGGAUUGUGCAAA-CACGCACAUGUACUCAUCCAUAUGCACGUAUUUGGCGGCAGGUACUUGGCCGCCCGUCCGCCCC-ACCUGCCGCCACUCUAACACCCAUGCUCG ((((........((((((((((...-...))))).......)))))......))))..(((((((((((....(((.........)))..-))))))))))).................. ( -36.65, z-score = -2.34, R) >consensus UACGCUUUAAAUUGGAUUGUGCAAA_CACGCACAUGUACUCAUCCAUAUGCACGUAUUUGGCUGCAGGUACUUGGCCGCCCGUCCGCCCC_ACCUGCCGCCACUCUAACACCCAUGCUCG ((((........((((((((((.......))))).......)))))......))))..((((.((((((....((.((......)).))..)))))).)))).................. (-29.17 = -28.95 + -0.22)
| Location | 1,992,747 – 1,992,867 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.67 |
| Shannon entropy | 0.04591 |
| G+C content | 0.61389 |
| Mean single sequence MFE | -48.17 |
| Consensus MFE | -47.13 |
| Energy contribution | -46.47 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.731040 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1992747 120 - 22422827 CCGGGGACUAUGGACUAUCCGUUCCACAUGCAGGCCAUGGCGAUGCAGUGGGUGCAAUUCCACGCGGUCGACGCAUCUACAGCUUGUGGAGUAUGUGACGGAUGGCACGAUCGAGGGCAC (((....)..((..(((((((((((((.((((.((....))..))))))))..(((((((((((((.....)))..(....)...))))))).))))))))))))..)).....)).... ( -43.40, z-score = -0.31, R) >droSec1.super_10 1777220 120 - 3036183 CCGGGGACUAUGGACCAUCCGUUCCACAUGCAGGCCAUGGCGAGGCAGUGGGUGCAAUUCCACGGGGCCGACGCAUCUACAGCUUGUGGAGUAUGUGACGGAUGGCACGAUCGAGGGCAC (((....)..((..((((((((..(((((((........(((.(((.(((((......)))))...)))..))).(((((.....))))))))))))))))))))..)).....)).... ( -49.60, z-score = -1.65, R) >droSim1.chrX 1401517 120 - 17042790 CCGGGGACUAUGGACCAUCCGUUCCACAUGCAGGCCAUGGCGAGGCAGUGGGUGCAAUUCCACGGGGCCGACGCAUCCACAGCUGGUGGAGUAUGUGACGGAUGGCACGAUCGAGGGCAC (((....)..((..((((((((..(((((((........(((.(((.(((((......)))))...)))..))).(((((.....))))))))))))))))))))..)).....)).... ( -51.50, z-score = -1.62, R) >consensus CCGGGGACUAUGGACCAUCCGUUCCACAUGCAGGCCAUGGCGAGGCAGUGGGUGCAAUUCCACGGGGCCGACGCAUCUACAGCUUGUGGAGUAUGUGACGGAUGGCACGAUCGAGGGCAC (((....)..((..((((((((..(((((((.((((...((...)).(((((......)))))..))))......(((((.....))))))))))))))))))))..)).....)).... (-47.13 = -46.47 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:14 2011