| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,979,134 – 1,979,216 |
| Length | 82 |
| Max. P | 0.562523 |
| Location | 1,979,134 – 1,979,216 |
|---|---|
| Length | 82 |
| Sequences | 5 |
| Columns | 86 |
| Reading direction | forward |
| Mean pairwise identity | 80.89 |
| Shannon entropy | 0.33444 |
| G+C content | 0.50346 |
| Mean single sequence MFE | -30.57 |
| Consensus MFE | -11.54 |
| Energy contribution | -13.02 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.69 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.562523 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1979134 82 + 22422827 GGCCGAAGCGUCGAUUGCUCUUAAUUGGGCAGUUGAUUGGGCAACCUGC--UAACCAGUUUGCGGCCUUCUUCGACUGU--AGAAU ((((((((((((((((((((......))))))))))).((....))...--......)))).)))))((((........--)))). ( -32.20, z-score = -3.10, R) >droSec1.super_10 1763762 80 + 3036183 -GCCGAAGCGUCGAUUGCUCUUAAUUGG-CAGUUGGUUGGGCAACCUGC--UAACCAGUUUGCGGCCUUCUCCGACUGU--GGAAU -((((((((((((((((....)))))))-).((((((.((....)).))--))))..)))).))))....((((....)--))).. ( -29.50, z-score = -2.08, R) >droYak2.chrX 15424892 81 - 21770863 GGCCGACGCGUUGAUUGCUCUUAAUUGG-CAGUUGGUUGGGCAACCAGC--UAACCAGUUUGCGGCCUUCUGCGACUGU--GGAAU (((((..((((..((((....))))..)-).(((((((((....)))))--))))..))...)))))(((..(....).--.))). ( -34.90, z-score = -3.23, R) >droEre2.scaffold_4644 1951495 82 + 2521924 GGCCGCAGCGUUGAUUGCUCUUAAUUGG-CAGUUGGUUGGGCAACCUGC--UAACCAGUUUGCGGCCUUCUACGACUGUA-GGAAU (((((((((((..((((....))))..)-).((((((.((....)).))--))))..).))))))))((((((....)))-))).. ( -36.20, z-score = -3.79, R) >droAna3.scaffold_13117 5127783 80 + 5790199 -----AUGCCAUGAUUGCUCUUAAUUGG-CAUUUGGUCUGGGAAUCGCCAGUAACCAGUUGGCGUGUUUCUUAAAACCUAUAUAAU -----((((((..............)))-)))..(((..((((((((((((.......)))))).))))))....)))........ ( -20.04, z-score = -1.27, R) >consensus GGCCGAAGCGUUGAUUGCUCUUAAUUGG_CAGUUGGUUGGGCAACCUGC__UAACCAGUUUGCGGCCUUCUUCGACUGU__GGAAU (((((..((...(((((.((......)).)))))((((..((.....))...)))).))...)))))................... (-11.54 = -13.02 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:10 2011