| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,967,503 – 1,967,608 |
| Length | 105 |
| Max. P | 0.630656 |
| Location | 1,967,503 – 1,967,608 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.88 |
| Shannon entropy | 0.38924 |
| G+C content | 0.57452 |
| Mean single sequence MFE | -43.36 |
| Consensus MFE | -23.20 |
| Energy contribution | -24.56 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.630656 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1967503 105 + 22422827 GUUCGAAUGGUGCGCGCCUU-GAGUGGUUCCACAGUGGCAGGUGUUUGUUUCCAAGCAAACGCGAGCGUCGGGCACACUGCCCGGAUCACAG--UGUGCCG-UCCCAAU----------- ....(.((((..((((((..-..(((....)))...)))..(((((((((....)))))))))((...((((((.....)))))).))...)--))..)))-).)....----------- ( -42.20, z-score = -1.65, R) >droSim1.chrX 1382900 105 + 17042790 GUUCGAAUGGUGAGCGCCUU-GAGUGUUUCCACAGUGGCAGGUGUUUGUUUCCAAGCAAACGCGAGCGACGGGCACACUGCCCGGAUCGCAG--UGUGCCG-UCUCAGU----------- ((((...(((.((((((...-..))))))))).........(((((((((....)))))))))))))(((((.((((((((.......))))--)))))))-)).....----------- ( -43.80, z-score = -2.19, R) >droSec1.super_10 1752434 105 + 3036183 GUUCGAAUGGUGAGCGCCUU-GAGUGUUUCCACAGUGGCAGGUGUUUGUUUCCAAGCAAACGCGAGCGACGGGCACACUGCCCGGAUCGCAG--UGUGCCG-UCUCAGU----------- ((((...(((.((((((...-..))))))))).........(((((((((....)))))))))))))(((((.((((((((.......))))--)))))))-)).....----------- ( -43.80, z-score = -2.19, R) >droYak2.chrX 15412678 114 - 21770863 GUUCGAAUAAGGCGCGCUUUCGAGUGGGACCACAGUGGCAGGUGUUU----CUAGGCAAACG--AGUGACGGUCACACUGGCCGGACCGAUGUGUGCGCCGGUUCCAAUUGGAAUCUAAU ..........(((((((..(((..(.((.(((..(((((....(((.----((.(.....).--)).))).)))))..))))).)..)))...)))))))((((((....)))))).... ( -41.40, z-score = -1.24, R) >droEre2.scaffold_4644 1940385 111 + 2521924 AUUCAAAUGGGGCGCGCUUU-GAGUGGGACCACAGUGGCAGGUGUUC----CCUGGCAAACG--GGAGAUGGGCACACUGCUCGUAUCCCUG-GUGCGGCG-UUCCAAUUGGAAUCCAAU .(((((.(((((((((((((-(...((((.(((........))).))----))...)))).(--(((.((((((.....)))))).))))..-..)).)))-))))).)))))....... ( -45.60, z-score = -1.74, R) >consensus GUUCGAAUGGUGCGCGCCUU_GAGUGGUUCCACAGUGGCAGGUGUUUGUUUCCAAGCAAACGCGAGCGACGGGCACACUGCCCGGAUCGCAG__UGUGCCG_UCCCAAU___________ ....((.(((((((((((.....(((....)))...)))..((((((((......))))))))..))..(((((.....)))))...........)))))).))................ (-23.20 = -24.56 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:08 2011