| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,966,782 – 1,966,902 |
| Length | 120 |
| Max. P | 0.783145 |
| Location | 1,966,782 – 1,966,902 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.83 |
| Shannon entropy | 0.22102 |
| G+C content | 0.36833 |
| Mean single sequence MFE | -25.68 |
| Consensus MFE | -16.68 |
| Energy contribution | -16.48 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.783145 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1966782 120 - 22422827 UUAUUUUCGAACUCCUUAACCAAAGACAAGAAUACAAUGUGUCCAAAGAUACAAUGUUUACCUCGAGAUAGCGAGAUAUCAACAAUUUGUUCGGUACUAUCCGUAUCAACAGGUCUAAGG .............((((((((...((((((...(((.((((((....)))))).)))....((((......))))..........)))))).(((((.....)))))....))).))))) ( -25.90, z-score = -2.14, R) >droEre2.scaffold_4644 1939592 120 - 2521924 UUAUUUUCGACCCUCUUAACCAAAGACUAGAAUACGAAGUGUUCAAAGGUACGGUGUUUACCUAGAGAUAGCGAGAUAUCAAUAAUAUGUUUGAUACUAUCCGUAUCAACAGGUCUAAAG ........((((.((((.....))))...((((((...))))))...((((((((((((......)))))...((.((((((........))))))))..)))))))....))))..... ( -24.40, z-score = -0.96, R) >droYak2.chrX 15411898 120 + 21770863 UUAUUUUCGAACCCCUUAACCAAAGACCAAAAUACAAUGUGUCCAAAGAUACACUGUUUACGUUGAGAUAGCGAGAUAUCAACAGUUUGUUAGAUACUUUCCGUAUCAACAGGUCUAAAG .......................(((((.....(((.((((((....)))))).)))....(((((....(.(((((((((((.....))).)))).)))))...))))).))))).... ( -26.60, z-score = -3.32, R) >droSec1.super_10 1751752 112 - 3036183 --------GAACCCCUUAAACAAAGACAAGAAUACAAAGUGUCCAAAGAUACAAUGUUUACCUCGAGAUAGCGAGAUAUCAACAAUUUGUUCGGUACUAUCCGUAUAAACAGGUCUAAGG --------.....(((((.((.................(((((....)))))..((((((...((.(((((.....(((((((.....))).)))))))))))..)))))).)).))))) ( -21.60, z-score = -1.70, R) >droSim1.chrX 1381895 120 - 17042790 UUAUUUUUGAACCCCUUAACCAAAGACCAGAAUACAAAGUGUCCAAAGAUACAAUGUUUACCUCGCGAUAGCGAGAUAUCAACAAUUUGUUCGGUACUAUCCGUAUCAACAGGUCUAAGG ...................((..(((((.(((((....(((((....)))))..((((((.(((((....))))).))..))))...)))))(((((.....)))))....)))))..)) ( -29.90, z-score = -3.80, R) >consensus UUAUUUUCGAACCCCUUAACCAAAGACAAGAAUACAAAGUGUCCAAAGAUACAAUGUUUACCUCGAGAUAGCGAGAUAUCAACAAUUUGUUCGGUACUAUCCGUAUCAACAGGUCUAAGG .......................(((((.....(((..(((((....)))))..))).........((((......)))).......((((.(((((.....)))))))))))))).... (-16.68 = -16.48 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:07 2011