Locus 12752

Sequence ID dm3.chrX
Location 1,964,866 – 1,964,968
Length 102
Max. P 0.757656
window17530

overview

Window 0

Location 1,964,866 – 1,964,968
Length 102
Sequences 3
Columns 102
Reading direction reverse
Mean pairwise identity 94.12
Shannon entropy 0.08103
G+C content 0.48198
Mean single sequence MFE -26.83
Consensus MFE -23.73
Energy contribution -24.07
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.82
Structure conservation index 0.88
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.60
SVM RNA-class probability 0.757656
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 1964866 102 - 22422827
ACUGCUGCUGCGUCAUUGCCACAGUAGCUAUCGAUGCGGGAAUACUUAAUCCCGGGUACUAAUUCCCCUAAAGCGACAGUUUCCCUGUGGAUAUCCAAUAGC
...((((.((.(......((((((.((((.(((....((((........))))(((........)))......))).))))...))))))....))).)))) ( -28.10, z-score =  -1.23, R)
>droSec1.super_10 1749810 101 - 3036183
CCUGCUGCUGCGUCA-UGCCACAGUAGCUAUCGAUGCGGGAAUACUUAAUCCCGGUUACUAAUUCCCCCAAAGCUACAGUUCCCCUGUGGAUAUCCAAUAUU
...(((((((.(...-...).)))))))....((((.((((((...((((....))))...))))))......((((((.....)))))).))))....... ( -26.30, z-score =  -1.92, R)
>droSim1.chrX_random 1168276 102 - 5698898
CCUGCUGCUGCGUCAUUGCCACAGUAGCUAUCGAUGCGGGAAUACUUAAUCCCGGUUACUAAUUCCCCCAAAACUACAGUUCCCCUGUGGAUAUCCAAUAUU
...(((((((.(.......).)))))))....((((.((((((...((((....))))...))))))......((((((.....)))))).))))....... ( -26.10, z-score =  -2.33, R)
>consensus
CCUGCUGCUGCGUCAUUGCCACAGUAGCUAUCGAUGCGGGAAUACUUAAUCCCGGUUACUAAUUCCCCCAAAGCUACAGUUCCCCUGUGGAUAUCCAAUAUU
...(((((((.(.......).)))))))....(((((((((........)))))...................((((((.....)))))).))))....... (-23.73 = -24.07 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:07 2011