| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,705,100 – 9,705,193 |
| Length | 93 |
| Max. P | 0.654671 |
| Location | 9,705,100 – 9,705,193 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 64.86 |
| Shannon entropy | 0.55685 |
| G+C content | 0.33413 |
| Mean single sequence MFE | -21.07 |
| Consensus MFE | -9.10 |
| Energy contribution | -8.54 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.654671 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9705100 93 + 23011544 CAAAUGAUCUCACAAAAUUGGGCAAUGAGGGCUAACCUUGCCGGAUUCA--UUAGUCUU------------GCACUUUUUCAAUA--UAUUUAGUGCAGUACAAUGUUU ...............((((.((((...(((.....))))))).))))((--((.((.((------------(((((.........--.....))))))).))))))... ( -21.04, z-score = -1.35, R) >droSim1.chr2L 9485063 103 + 22036055 CAAAUGAUCUCACAAAAUUGGGCAAUGAGGGCUAACCUUGCCUGAUUCA--UUAGUCUUUAAUUGUAU--UGUACUUCUUUAAAA--UAUUUAGUGCAGUAAAAUGUUU ...........((((....(((((((((((((.......))))...)))--)).))))....))))((--((((((.........--.....))))))))......... ( -20.54, z-score = -1.12, R) >droSec1.super_3 5152756 90 + 7220098 CAAAUGAUCUCACAAAAUUGGGCAAUGAGGGCUAACCUUGCC---CUUA--AUUGUAUU------------GCACUUCUUCAUAA--UAUUUAGUGCAGUACCAUGUUU ..................((((((((((((((.......)))---))).--)))))(((------------(((((.........--.....)))))))).)))..... ( -25.04, z-score = -2.94, R) >droAna3.scaffold_12943 1134096 109 + 5039921 UAAAUGUUGUCUUUAAAAAGGGGUCUCAUAAUUAAGUUGCUUAUUUUCAGAUACGUUUUGUAGAGUUUCGUGUAUUUUUUUCAAACUUAUUUAGAGCGUAUCGAAGUUC ..........((((.((((..(((..(........)..)))..))))..(((((((((((..((((((..............))))))...)))))))))))))))... ( -17.64, z-score = -0.52, R) >consensus CAAAUGAUCUCACAAAAUUGGGCAAUGAGGGCUAACCUUGCC_GAUUCA__UUAGUCUU____________GCACUUCUUCAAAA__UAUUUAGUGCAGUACAAUGUUU ...............((((.((((...(((.....))))))).))))........................(((((................)))))............ ( -9.10 = -8.54 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:48 2011