| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,955,333 – 1,955,437 |
| Length | 104 |
| Max. P | 0.936693 |
| Location | 1,955,333 – 1,955,437 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 80.21 |
| Shannon entropy | 0.36572 |
| G+C content | 0.46997 |
| Mean single sequence MFE | -35.95 |
| Consensus MFE | -21.90 |
| Energy contribution | -22.07 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.936693 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1955333 104 - 22422827 GUGCUGGCAC-CUCGGCCAUUUUGUGGCUGGAAAAAAAGCCAUUUUGAAAGCGGAAGUGCAGCGUCAGCCAUUUUCGUUGAAUGUCUUCCUUUUGGUGGGCACUA------ (((((..(((-(.(((((((...)))))))((((..(((.(((((....((((((((((..((....))))))))))))))))).)))..)))))))))))))..------ ( -36.20, z-score = -1.51, R) >droSim1.chrX_random 1159071 103 - 5698898 GUGUUGACAC-CUCGGCCAUUUUGUGGCUGG-AAAAUAGCCAUUUUGAAAGCGGAAGUGCAGCGUCAGCCAUUUUCGUUGAAUGUCAUCCGUUUGGUGUGCACUA------ ((((..((((-(.(((.(((((.(((((((.-....)))))))......((((((((((..((....)))))))))))))))))....)))...)))))))))..------ ( -35.10, z-score = -2.20, R) >droSec1.super_10 1740185 103 - 3036183 GUGUUGGCAC-CUCGGCCAUUUUGUGGCUGG-AAAAUAGCCAUUUUGAAAGCGGAAGUGCAGCGUCAGCCAUUUUCGUUGAAUGUCAUCCGUUUGGUGUGCACUA------ ((((..((((-(.(((.(((((.(((((((.-....)))))))......((((((((((..((....)))))))))))))))))....)))...)))))))))..------ ( -35.40, z-score = -1.90, R) >droYak2.chrX 15400155 106 + 21770863 GUGCUGGCAC-UUCGGCCAUUUUGUGGUUGG-AAAAUAGCCAUUUUGAAAGCGGAAGUGCAGCGUCAGCCAUUUUCGUUGAAUGCCUUCCAUUUAUUGUGCUGCACUA--- ((((.(((((-....((..((..(((((((.-....)))))))...))..))(((((.(((...(((((.......))))).)))))))).......)))))))))..--- ( -37.70, z-score = -2.59, R) >droEre2.scaffold_4644 1927830 103 - 2521924 GUGCUGGCAC-UUCGACCAUUUUGUGGUUGG-AAAAUAGCCAUUUUGAAAGCGGAAGUGCAGCGUCAGCCAUUUUCGUUGAAUGCUUCCCGUUUGGCGUGCACUA------ ......((((-(((((((((...))))))))-).....((((.......(((((((((.(((((...........)))))...)))).)))))))))))))....------ ( -33.21, z-score = -1.22, R) >droAna3.scaffold_12929 1953621 107 - 3277472 GUGAUGGCUCAUUUGGCGGUUUAAUGGCUGC-CAAACAGCCAUUUUGCCAGCGGAAGUGUCAGGU-GGCCAUUUU-GUUUUUUGUUCUUU-UUGAGUUUUCUUUGUUAGUU ..((((((.(((((((((((..((((((((.-....))))))))..))).((....)))))))))-)))))))..-..............-.................... ( -38.10, z-score = -4.00, R) >consensus GUGCUGGCAC_CUCGGCCAUUUUGUGGCUGG_AAAAUAGCCAUUUUGAAAGCGGAAGUGCAGCGUCAGCCAUUUUCGUUGAAUGUCUUCCGUUUGGUGUGCACUA______ ((((((((....((((((((...)))))))).......)))).......((((((((((..((....))))))))))))....................))))........ (-21.90 = -22.07 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:08:03 2011