Locus 12744

Sequence ID dm3.chrX
Location 1,923,245 – 1,923,351
Length 106
Max. P 0.968337
window17519

overview

Window 9

Location 1,923,245 – 1,923,351
Length 106
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 74.57
Shannon entropy 0.34708
G+C content 0.46709
Mean single sequence MFE -31.83
Consensus MFE -24.11
Energy contribution -26.17
Covariance contribution 2.06
Combinations/Pair 1.06
Mean z-score -2.07
Structure conservation index 0.76
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.80
SVM RNA-class probability 0.968337
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 1923245 106 + 22422827
-------------GUUCGAUUGAACAAAGAGUGCUCUCUUGUCCUGUCCGAUUACAGGAUAACCAAA-GGUUUCUCCAUUUGACGGUUCAAUUCCUCGAGCUCCGAUUUGUUUACGAGCG
-------------(((((..((((((((..(.((((..(((((((((......))))))))).((((-((.....)).))))...............))))..)..))))))))))))). ( -31.80, z-score =  -2.65, R)
>droEre2.scaffold_4644 1895524 120 + 2521924
UCGAACUGCUUGGGUUCGAUUGAACAAAGAGUGCUCUCUUGUCCUGCUGCAUUGCAGGAUAACCAAAAGGUUUCUCCCUCUGAAGGUUGAAUUCCUCGAGCUCCGAUUUGUUCACGAGCG
(((((((.....))))))).((((((((..(.((((..(((((((((......))))))))).....(((.(((..(((....)))..)))..))).))))..)..))))))))...... ( -42.00, z-score =  -3.09, R)
>droSec1.super_10 1708304 86 + 3036183
-------------GGUCGAUUGAACAAAGAGUGCUCUCUUGUC------------AGGAUAACCAAA-GGUUUCUCCGUUUGAAGGUUCAA--------GCUCCGAUUCGUUUACGAGCG
-------------(.(((..(((((.(((((....)))))(((------------.(((.((((...-))))..)))((((((....))))--------))...)))..)))))))).). ( -21.70, z-score =  -0.45, R)
>consensus
_____________GUUCGAUUGAACAAAGAGUGCUCUCUUGUCCUG____AUU_CAGGAUAACCAAA_GGUUUCUCCAUUUGAAGGUUCAAUUCCUCGAGCUCCGAUUUGUUUACGAGCG
.............(((((..((((((((..(.((((..(((((((((......))))))))).((((.((.....)).))))...............))))..)..))))))))))))). (-24.11 = -26.17 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:57 2011