| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,880,976 – 1,881,103 |
| Length | 127 |
| Max. P | 0.505292 |
| Location | 1,880,976 – 1,881,103 |
|---|---|
| Length | 127 |
| Sequences | 4 |
| Columns | 134 |
| Reading direction | forward |
| Mean pairwise identity | 72.20 |
| Shannon entropy | 0.44120 |
| G+C content | 0.34661 |
| Mean single sequence MFE | -21.72 |
| Consensus MFE | -10.89 |
| Energy contribution | -9.70 |
| Covariance contribution | -1.19 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.505292 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1880976 127 + 22422827 GCGAAUGCACGCAUAU--GUACAUACAUAUGCAACCAGAAACAUAUAAUUCGAGUGGAAUAAGAAUAAAUGCAUUGUAGCAUUCUAUUUCUCGAAGGAAACAAUAUGAAAACG-----AAAAACCAAACAAUUA .((.......((((((--((....)))))))).........(((((..((((((..(((((.((....((((......)))))))))))))))))(....).)))))....))-----................ ( -26.60, z-score = -3.21, R) >droEre2.scaffold_4644 1852048 101 + 2521924 GCAAACACAUGUACAU-----UGUAUGUAUGCAAGCAGAAACA-GAAAUUCGAAGGAUAUAGGAA---AUGCAUCGUAGCAUUCGAUUGCUCGCAGGAAGCAA-ACAAUUA----------------------- ..............((-----(((.(((.(((.(((((.....-.....((....)).....(((---.(((......))))))..))))).)))....))).-)))))..----------------------- ( -19.20, z-score = -0.19, R) >droSec1.super_10 1667193 126 + 3036183 GCGAAUGCACGCAUACAAGUAUGUACAUAUGCAACCAGAAACAUCAAAUACGA-----AUAAGAA---AUGCAUCUUAGCAUUCUAUUUCUCGAAGGAAACAAUAUGAAAAUGAAAUGAAAAACCAAACAAUUA ..((((((..(((((...((....)).))))).....................-----.(((((.---.....)))))))))))((((((.....(....)...((....))))))))................ ( -18.30, z-score = -1.13, R) >droSim1.chrX 1323351 125 + 17042790 GCGAAUGCACGCGUACAAGUAUGUACAUAUGCAACCAGAAACAUCAAAUACGAGCG-AAUAAGAA---GUGCAUCUUAGCAUUCUAUUUCUCGAAGGAAACAAUAUGAAAACG-----AAAAACCAAACAAUUA .((..((((...(((((....)))))...))))..........(((....((((.(-((((.(((---.(((......)))))))))))))))..(....)....)))...))-----................ ( -22.80, z-score = -1.73, R) >consensus GCGAAUGCACGCAUAC__GUAUGUACAUAUGCAACCAGAAACAUCAAAUACGAG_G_AAUAAGAA___AUGCAUCGUAGCAUUCUAUUUCUCGAAGGAAACAAUAUGAAAACG_____AAAAACCAAACAAUUA (((......))).............(((((...............................((((...((((......)))).....))))....(....).)))))........................... (-10.89 = -9.70 + -1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:55 2011