| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,877,502 – 1,877,610 |
| Length | 108 |
| Max. P | 0.620510 |
| Location | 1,877,502 – 1,877,610 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 86.80 |
| Shannon entropy | 0.17686 |
| G+C content | 0.47536 |
| Mean single sequence MFE | -33.00 |
| Consensus MFE | -28.25 |
| Energy contribution | -27.70 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.620510 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1877502 108 - 22422827 -----CGAUUUCAAUUGGUUGGAACGAAAUGUAUAAUACACUUCG--AUCCAU---UGCGACUGCGAGUGUGGAAACGCUACUGCUAUUUUGGUGUUUGUGGUGAGCAUGUGGAAACG -----((.(((((......((((.((((.((((...)))).))))--.)))).---(((.((..((((..(.((((.((....))..)))).)..))))..))..)))..))))).)) ( -29.60, z-score = -1.52, R) >droSim1.chrX 1322181 115 - 17042790 CACAGCGGUUCCGAUUGGUUGGAGCGAAACGU---AUACACUUCGCAUUCCAUAUGGGCGACUACGAGUGUGGAAACGCUACUGCUAUUUUGGUGUUUGUGGUGAGCAUGUGGAAACG ....((((((((((....))))))).....((---....))..))).(((((((((..(.((((((((..(.((((.((....))..)))).)..)))))))))..)))))))))... ( -37.40, z-score = -1.59, R) >droSec1.super_10 1663011 105 - 3036183 -----CGCUUCCGAUUGGUUGGAGCGAAACGU---AUGCACUUCG--AUCCAU---UGCGACUACGAGUGUGGAAACGCUACUGCUAUUUUGGUGUUUGUGGUGAGCAUGUGGAAACG -----((((.((((....))))))))......---..........--.(((((---(((.((((((((..(.((((.((....))..)))).)..))))))))..))).))))).... ( -32.00, z-score = -1.18, R) >consensus _____CGAUUCCGAUUGGUUGGAGCGAAACGU___AUACACUUCG__AUCCAU___UGCGACUACGAGUGUGGAAACGCUACUGCUAUUUUGGUGUUUGUGGUGAGCAUGUGGAAACG .....((.((((((....))))))))......................(((((...(((.((((((((..(.((((.((....))..)))).)..))))))))..))).))))).... (-28.25 = -27.70 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:54 2011