| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,876,931 – 1,877,023 |
| Length | 92 |
| Max. P | 0.880893 |
| Location | 1,876,931 – 1,877,023 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 66.77 |
| Shannon entropy | 0.45986 |
| G+C content | 0.43279 |
| Mean single sequence MFE | -25.40 |
| Consensus MFE | -14.57 |
| Energy contribution | -14.58 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.880893 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1876931 92 + 22422827 AAAAAUGGUGCGUUUUCGAAAUCGAGAAUACUGUAAUAAAUGGUCACACUAGUGUUA--------------GCCGAACUGGCAUUUUCCCCUGUUGCGACACUGGG .......(((.(((((((....)))))))(((((.....)))))))).((((((((.--------------((..(((.((........)).))))))))))))). ( -21.60, z-score = -0.62, R) >droSim1.chrX 1321645 74 + 17042790 AAAAAUGGUGCGUUUUCGAAAUCGAGAGCACUGUAACAAAAGAUCACACUAGUGUUAAAUGCU--------GCGACACUAGA------------------------ ....(((((((..(((((....))))))))))))..............((((((((.......--------..)))))))).------------------------ ( -20.10, z-score = -2.38, R) >droSec1.super_10 1662452 106 + 3036183 AAAAAUGGUGCGUUUUCGAAAUCGAGAGCACUGUAACAAAAGGUCACACUAGUGUUAAAUGUGCUGCGUUAGCCGCACUGGGAGUUUCCCCUGCUGCGACACUAGA ....(((((((..(((((....))))))))))))..............((((((((....((((.((....)).)))).(((.....))).......)))))))). ( -34.50, z-score = -2.10, R) >consensus AAAAAUGGUGCGUUUUCGAAAUCGAGAGCACUGUAACAAAAGGUCACACUAGUGUUAAAUG__________GCCGCACUGGAA_UUUCCCCUG_UGCGACACU_G_ ....(((((((..(((((....))))))))))))..............(((((((...................)))))))......................... (-14.57 = -14.58 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:54 2011