| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,693,259 – 9,693,344 |
| Length | 85 |
| Max. P | 0.892477 |
| Location | 9,693,259 – 9,693,344 |
|---|---|
| Length | 85 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 74.26 |
| Shannon entropy | 0.47854 |
| G+C content | 0.47865 |
| Mean single sequence MFE | -27.83 |
| Consensus MFE | -15.05 |
| Energy contribution | -16.50 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.892477 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9693259 85 - 23011544 UUAAGUCGCCG-AGAGGGGGAAAAG-CCGGAAUUUUCCGAGAA-UUCAAUAAGGUAAAUGG------UUCUGGUUCCCCCUGGUGACCAAUUCC ....((((((.-..(((((((...(-((((((((..((.....-........)).....))------))))))))))))))))))))....... ( -32.82, z-score = -3.08, R) >droPer1.super_1 8330393 77 + 10282868 ---------UUAUGGAAACGAGCUCUCGAGAGUUUCCCAAGAGUUUCAAUAAGACAAAUGUGU---UAUCUGGCUCUCCCAGUUCCCCA----- ---------....((.(((((((((....))))))....((((((...((((.((....)).)---)))..))))))....))).))..----- ( -16.90, z-score = -1.13, R) >droSim1.chr2L 9473109 86 - 22036055 UUAAGUUGCCGUCGAGGGGGAAAAG-CCGGAAUUUUCCGAGAA-UUCAAUAAGGUAAAUGG------UUCUGGUUCCCCCUGGUGACCAAUUCC ....((..((....(((((((...(-((((((((..((.....-........)).....))------))))))))))))))))..))....... ( -30.02, z-score = -2.17, R) >droSec1.super_3 5140770 87 - 7220098 UUAAGUCGGCGUCGAGGGGAAAAAGUCCGGAAUUUUCCGAGAA-UUCAAUAAGGUAAAUGG------UUCUGGUUCCCCCUGGUGACCAAUUCC .......(((..((.((((((.....((((((((..((.....-........)).....))------)))))))))))).))..).))...... ( -24.02, z-score = -0.41, R) >droYak2.chr2L 12380152 86 - 22324452 UUAAGUCGCCG-UGUGGGGGGAAAACCCGGAGUUUUCCGAGAA-UUCAAUAAGGUAAAUGG------UUCUCGUUCCCCCUGGUGACCAAUUCC ....(((((((-.(.(((((((((((.....)))))))(((((-((.............))------)))))...))))))))))))....... ( -31.32, z-score = -2.35, R) >droEre2.scaffold_4929 10306504 90 - 26641161 UUAAGUCGC---CGAGGGGGGGAAACGCGGAAUUUUCCGGGAA-UUCAAUAAGGUAAAUGGUUCUGUUUCUGGUUCCCCCAGGUGACCAAUUCC ....(((((---(..(((((((((((.((((....))))((((-((.............))))))))))))....))))).))))))....... ( -31.92, z-score = -1.38, R) >consensus UUAAGUCGCCG_CGAGGGGGAAAAG_CCGGAAUUUUCCGAGAA_UUCAAUAAGGUAAAUGG______UUCUGGUUCCCCCUGGUGACCAAUUCC ....(((((((....(((((((....((((((....(((......((.....))....)))......))))))))))))))))))))....... (-15.05 = -16.50 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:47 2011