Locus 12739

Sequence ID dm3.chrX
Location 1,875,348 – 1,875,468
Length 120
Max. P 0.732016
window17514

overview

Window 4

Location 1,875,348 – 1,875,468
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 80.83
Shannon entropy 0.26574
G+C content 0.56111
Mean single sequence MFE -38.67
Consensus MFE -30.26
Energy contribution -29.60
Covariance contribution -0.66
Combinations/Pair 1.13
Mean z-score -1.61
Structure conservation index 0.78
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.53
SVM RNA-class probability 0.732016
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 1875348 120 - 22422827
CAUCCACCAUCCGAAGAGGAGGCUGGCGCGGAUUAACGAAUAUCCAGCCUCUAAACUCCGUUUCCGAGUGGGCGAAGAUGGGAGUCGUGAUCGAAGCCACUUUUACCAACUCCCCAUCAG
..(((((..((.((((.((((...(((..((((........)))).)))......)))).)))).)))))))....(((((((((.((((..(......)..))))..))).)))))).. ( -37.90, z-score =  -1.40, R)
>droEre2.scaffold_4644 1846891 96 - 2521924
-------GAUCCGUUGAGGAGGCUGGCGCGGAUUAACGAACAUCCAGCCUUC-AGCUCCGCUUCCGAGUGGGCGAAGAUGGGAGUCGUGAUCGAAGCCACUCUU----------------
-------...(((((..(((((((((..((......)).....)))))))))-.((.(((((....)))))))...)))))((((.((.......)).))))..---------------- ( -35.70, z-score =  -0.80, R)
>droSec1.super_10 1660825 120 - 3036183
CAUCCACCAUCCGAAGAGGAGGCUGGCGCGGAUUAACGAAUAUCCAGCCUCCAAACUCCGUUUCCGAGUGGGCGAAGAUGGGAGUCGUGAUCGAACCCACUUUUCCCAACUCCCCAUCAG
............((...(((((((((..((......)).....))))))))).............(((((((.((((.((((..(((....))).)))))))).))).))))....)).. ( -42.40, z-score =  -2.62, R)
>consensus
CAUCCACCAUCCGAAGAGGAGGCUGGCGCGGAUUAACGAAUAUCCAGCCUCCAAACUCCGUUUCCGAGUGGGCGAAGAUGGGAGUCGUGAUCGAAGCCACUUUU_CCAACUCCCCAUCAG
.................(((((((((..((......)).....))))))))).............((((((.(((..(((.....)))..)))...)))))).................. (-30.26 = -29.60 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:53 2011