Locus 12738

Sequence ID dm3.chrX
Location 1,872,418 – 1,872,514
Length 96
Max. P 0.821298
window17513

overview

Window 3

Location 1,872,418 – 1,872,514
Length 96
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 79.17
Shannon entropy 0.28870
G+C content 0.29792
Mean single sequence MFE -20.87
Consensus MFE -16.68
Energy contribution -17.13
Covariance contribution 0.45
Combinations/Pair 1.14
Mean z-score -1.59
Structure conservation index 0.80
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.80
SVM RNA-class probability 0.821298
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 1872418 96 - 22422827
-----------------------ACAAA-UAAGUACUUUGAGACCAGUUCUUAAUCUUGUCUUAAGGUUAUUUGAGAUAUACACUCAUUUUUUAAGACAGACUAACCGAUGAAUGAUUUC
-----------------------.((((-((...((((((((((.((........)).)))))))))))))))).......((.(((((..(((........)))..))))).))..... ( -18.90, z-score =  -1.48, R)
>droSec1.super_10 1657526 120 - 3036183
ACAUAAAAAAUAACCAAAGUUCCGUAGAUUAAUUAUUUUAAGACCAGUUCUAAAUCUUGUCUUAAGGUUAUUUGACACAUACACUCUUUUUUUAGGACAGACUAAGCGAUGAAUGAAUUC
.......((((((((..((((.....)))).......(((((((.((........)).)))))))))))))))........((.((.((.(((((......))))).)).)).))..... ( -18.80, z-score =  -0.62, R)
>droSim1.chrX 1316875 120 - 17042790
ACAUAAAAAAUAACCAAAGUUCCGUAGAUUAACUAUUUUAAGACCAGUUCUAAAUCUUGUCUUAAGGUUAUUUGACACAUACACUCAUUUUUUAGGACAGACUAAGCGAUGAAUGAUUUC
.......((((((((........((((.....)))).(((((((.((........)).)))))))))))))))........((.(((((.(((((......))))).))))).))..... ( -24.90, z-score =  -2.68, R)
>consensus
ACAUAAAAAAUAACCAAAGUUCCGUAGAUUAACUAUUUUAAGACCAGUUCUAAAUCUUGUCUUAAGGUUAUUUGACACAUACACUCAUUUUUUAGGACAGACUAAGCGAUGAAUGAUUUC
........................(((((.....((((((((((.((........)).)))))))))).))))).......((.(((((.(((((......))))).))))).))..... (-16.68 = -17.13 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:52 2011