| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,862,740 – 1,862,844 |
| Length | 104 |
| Max. P | 0.891784 |
| Location | 1,862,740 – 1,862,844 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 64.26 |
| Shannon entropy | 0.66345 |
| G+C content | 0.53445 |
| Mean single sequence MFE | -28.77 |
| Consensus MFE | -14.60 |
| Energy contribution | -17.78 |
| Covariance contribution | 3.18 |
| Combinations/Pair | 1.20 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.891784 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1862740 104 - 22422827 -----GCAGCGACUGCAGCCGGCUGCAGUUUGCAUCAUCACCUUGUGCCGUUGUCAGGGCAUUGGCACAGUUUCUACACUCACAC-ACUCGCACAGGCACACAGACACAC -----((.((((((((((....)))))).)))).........((((((((.(((....))).))))))))...............-....)).................. ( -31.80, z-score = -0.97, R) >droSec1.super_10 1648084 103 - 3036183 -----GCAGCGACUGCAGCCGGCUGCAGUUUGCAUCAUCACAUUGUGCCA-UGUCAGGGCAUUGGCACAGUUUCUACACUCACAC-ACUCGCACAGGCGCACAGACACAC -----((.((((((((((....)))))).))))........(((((((((-(((....))).)))))))))..............-....((....)))).......... ( -33.40, z-score = -1.71, R) >droAna3.scaffold_12929 1849145 104 - 3277472 CUGAGACUGAGACUGCAGCCGGCUGCAGUUUGCAUCAUCACCUUGUGCCGUUGUCAGGGCAUUGGCACAGUUUUUGCACUCACAC-AGACACAGGCACGC-CAUGU---- .((((....(((((((((....)))))))))(((........((((((((.(((....))).))))))))....))).))))...-....(((((....)-).)))---- ( -35.40, z-score = -0.48, R) >dp4.chrXL_group1a 2525340 103 - 9151740 CGGCGACGGCGACUGCAGCCGGCUGCAGUUUGCAUCAUCACCUUGUGCCGUUGUCAGGGCAUUGGCACAGUUUUUUCACUCACUC-ACACACACACACACACAC------ .((.((..((((((((((....)))))).))))....)).))((((((((.(((....))).))))))))...............-..................------ ( -32.40, z-score = -2.01, R) >droVir3.scaffold_12928 2419395 89 - 7717345 ------CGGCGACUG----CGACUGC-GCCUGCGUC--CGCGUU--AACGUCGUUUGUUUAAUUGCUCGUUGUUUCCUGUUAGUUCACAUGCAGCUAAACACAC------ ------(((((...(----((...((-(....))).--..))).--..)))))..((((((.((((....(((...(.....)...))).)))).))))))...------ ( -19.50, z-score = 1.38, R) >droMoj3.scaffold_6473 13933574 87 + 16943266 -----------------------UGCCGUUUGCAUCAUCACCUUGUGCCGUUGUCAGGGCAUUGGCACAGUUUCUCUUCUUCUUCUUCUUCUAUAUGCAUACAUGCAUAC -----------------------(((.....)))........((((((((.(((....))).)))))))).......................((((((....)))))). ( -20.10, z-score = -2.14, R) >consensus ______CAGCGACUGCAGCCGGCUGCAGUUUGCAUCAUCACCUUGUGCCGUUGUCAGGGCAUUGGCACAGUUUCUACACUCACAC_ACACGCACACACACACAC_C____ ........((((((((((....)))))))).))..........(((((((.(((....))).)))))))......................................... (-14.60 = -17.78 + 3.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:51 2011