Locus 12736

Sequence ID dm3.chrX
Location 1,838,216 – 1,838,309
Length 93
Max. P 0.892067
window17511

overview

Window 1

Location 1,838,216 – 1,838,309
Length 93
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 92.22
Shannon entropy 0.13864
G+C content 0.53855
Mean single sequence MFE -37.42
Consensus MFE -30.60
Energy contribution -32.20
Covariance contribution 1.60
Combinations/Pair 1.00
Mean z-score -2.25
Structure conservation index 0.82
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.10
SVM RNA-class probability 0.892067
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 1838216 93 + 22422827
GCAUUACGACUGCCGCUUGUUACCAAGUCCCAAAUGACUCUACAUUGCUAUAUGUACAUGUGUGCCUGGG--CGCAGGGGAGUAGGCGGCAGUUG
......((((((((((((((..((.((((......)))).(((((......)))))....(((((....)--))))))..).))))))))))))) ( -35.90, z-score =  -2.15, R)
>droYak2.chrX 15306115 85 - 21770863
GCAUUACGACUGCCGCUUGUUACCAAGUCCCAAAU----------UGCUAUAUGUACAUGUGUGCCGGGGGGCGCAGGGGAGUAGGCGGCAGUUA
.......((((((((((((...((..(((((....----------.(((((((....))))).))...)))))....))...)))))))))))). ( -35.50, z-score =  -2.10, R)
>droEre2.scaffold_4644 1814738 93 + 2521924
GCAUUACGACUGCCGCUUGUUACCAAGUCCCAAAUGGCUCUACAUGGCUAUAUGUACAUGUGUGCCUGGG--CGCAGGGGGGUAGACGGCAGUUA
.......((((((((....(((((...((((..((((((......)))))).........(((((....)--))))))))))))).)))))))). ( -35.50, z-score =  -1.26, R)
>droSec1.super_10 1631369 93 + 3036183
GCAUUACGACUGCCGCUUGUUACCAAGUCCCAAAUGGCUCUACAUUGCUAUAUGUACAUGUGUGCCUGGG--CGCAGGGGAGUAGGCGGCAGUUG
......(((((((((((((...((..((((((...(((.(.(((((((.....))).))))).)))))))--.))..))...))))))))))))) ( -40.10, z-score =  -2.88, R)
>droSim1.chrX 1291541 93 + 17042790
GCAUUACGACUGCCGCUUGUUACCAAGUCCCAAAUGGCUCUACAUUGCUAUAUGUACAUGUGUGCCUGGG--CGCAGGGGAGUAGGCGGCAGUUG
......(((((((((((((...((..((((((...(((.(.(((((((.....))).))))).)))))))--.))..))...))))))))))))) ( -40.10, z-score =  -2.88, R)
>consensus
GCAUUACGACUGCCGCUUGUUACCAAGUCCCAAAUGGCUCUACAUUGCUAUAUGUACAUGUGUGCCUGGG__CGCAGGGGAGUAGGCGGCAGUUG
......(((((((((((((...((..((((((.(((((........)))))..((((....)))).))))...))..))...))))))))))))) (-30.60 = -32.20 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:50 2011