Sequence ID | dm3.chrX |
---|---|
Location | 1,831,627 – 1,831,681 |
Length | 54 |
Max. P | 0.930379 |
Location | 1,831,627 – 1,831,681 |
---|---|
Length | 54 |
Sequences | 3 |
Columns | 55 |
Reading direction | forward |
Mean pairwise identity | 70.73 |
Shannon entropy | 0.40071 |
G+C content | 0.58642 |
Mean single sequence MFE | -15.43 |
Consensus MFE | -8.93 |
Energy contribution | -9.60 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.18 |
Mean z-score | -2.13 |
Structure conservation index | 0.58 |
Background model | dinucleotide |
Decision model | sequence based alignment quality |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.930379 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1831627 54 + 22422827 -CGCAAGUUCCACUUGCAUCAGGGUUCUCGGCACUCGCUGCCGCAUACCUCACCU -.(((((.....)))))....((((...(((((.....)))))...))))..... ( -18.10, z-score = -3.46, R) >droSec1.super_86 73009 54 + 128402 GCGAGGCUACUUCUCGCUCUACUACUA-CGGCUCUCGUAGCCGCACAGCUCACUU ((((((.....))))))..........-(((((.....)))))............ ( -14.10, z-score = -1.54, R) >droSim1.chrU 10347172 54 - 15797150 GCGAGGCUACUUCUCGCUCUACUACUA-CGGCUCUCGUAGCCGCACAGCUCACCU ((((((.....))))))..........-(((((.....)))))............ ( -14.10, z-score = -1.41, R) >consensus GCGAGGCUACUUCUCGCUCUACUACUA_CGGCUCUCGUAGCCGCACAGCUCACCU ((((((.....))))))...........(((((.....)))))............ ( -8.93 = -9.60 + 0.67)
Location | 1,831,627 – 1,831,681 |
---|---|
Length | 54 |
Sequences | 3 |
Columns | 55 |
Reading direction | reverse |
Mean pairwise identity | 70.73 |
Shannon entropy | 0.40071 |
G+C content | 0.58642 |
Mean single sequence MFE | -19.10 |
Consensus MFE | -10.16 |
Energy contribution | -10.50 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.27 |
Mean z-score | -1.95 |
Structure conservation index | 0.53 |
Background model | dinucleotide |
Decision model | sequence based alignment quality |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.768757 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1831627 54 - 22422827 AGGUGAGGUAUGCGGCAGCGAGUGCCGAGAACCCUGAUGCAAGUGGAACUUGCG- ..((.(((....(((((.....))))).....))).))(((((.....))))).- ( -18.30, z-score = -1.73, R) >droSec1.super_86 73009 54 - 128402 AAGUGAGCUGUGCGGCUACGAGAGCCG-UAGUAGUAGAGCGAGAAGUAGCCUCGC ......(((((((((((.....)))))-)).))))...(((((.......))))) ( -19.50, z-score = -2.27, R) >droSim1.chrU 10347172 54 + 15797150 AGGUGAGCUGUGCGGCUACGAGAGCCG-UAGUAGUAGAGCGAGAAGUAGCCUCGC ......(((((((((((.....)))))-)).))))...(((((.......))))) ( -19.50, z-score = -1.83, R) >consensus AGGUGAGCUGUGCGGCUACGAGAGCCG_UAGUAGUAGAGCGAGAAGUAGCCUCGC ......(((((.(((((.....)))))...)))))...(((((.......))))) (-10.16 = -10.50 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:48 2011