| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,822,073 – 1,822,188 |
| Length | 115 |
| Max. P | 0.891697 |
| Location | 1,822,073 – 1,822,188 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.79 |
| Shannon entropy | 0.55696 |
| G+C content | 0.51306 |
| Mean single sequence MFE | -32.94 |
| Consensus MFE | -16.43 |
| Energy contribution | -16.42 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.891697 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1822073 115 + 22422827 AAACU---ACCGUUUCGUUUGGCGCCAGUGCUGGCGGUGCAGGAGUAAUCACGCCAAAUCUGGCUAGUGUUUUCAAAUGGCUCACCGUUCCUUAGAAGACGCAUCUUCU--AAAGUAUCC .....---.........(((((.(((((...(((((.(((....)))....)))))...)))))..((((((((.(((((....))))).....)))))))).....))--)))...... ( -31.50, z-score = -0.82, R) >droSim1.chrX 1282886 111 + 17042790 AAACU---ACCGUUUCGUUUGCCGCCAGUGCUGGCGGUGCGGGAGUAUUCACGCCAAAUCUGGCUAGUGUUUUCAAAUGGCUCACCGUUCUCUAGAAGAGGUCUCUUCU--AAAGU---- .....---............(((((((....)))))))((((((((...(((((((....))))..)))..........)))).)))).((.(((((((....))))))--).)).---- ( -35.92, z-score = -1.99, R) >droSec1.super_10 1622710 109 + 3036183 --ACU---ACCGUUUCGUUUGCCGCCAGUGCUGGCGGUGCGGGAGUAUUCACGCCAAAUCUGGCUAGUGUUUUCAAAUGGCUCACCGUUCUCUAGAAGAGGUCUCUUCU--AAAGU---- --...---............(((((((....)))))))((((((((...(((((((....))))..)))..........)))).)))).((.(((((((....))))))--).)).---- ( -35.92, z-score = -2.01, R) >droYak2.chrX 15297238 117 - 21770863 AAACU---CCCGUUUCGUUUGCCGCCAGUGCUGACGGUGCUGGUGUUUUCACGCCAAAUCUGGCUAGCGUUUUCAAACGGCCUACUACUCCAUAGAAGUCGCCUAUCCUUAAACGUAUCC .....---..(((((.(((((.((((((..(.....)..)))))).......((((....)))).........)))))(((..(((.((....)).))).))).......)))))..... ( -30.00, z-score = -1.39, R) >droEre2.scaffold_4644 1806037 115 + 2521924 AAACU---CCCGUUUCGUAUGCCGCCAGUGCUGGCGGUGCGGGAGUAUUCACGCCAAAUCUGGCUAGCGUUUUCAAAUGGCCCAGCGCUCCAUAGAAGUCGCCUCUUCU--AACGUAUCC ..(((---(((((.......(((((((....)))))))))))))))......((((....)))).((((((.((....))...))))))...((((((......)))))--)........ ( -40.81, z-score = -2.80, R) >droAna3.scaffold_12929 1818716 102 + 3277472 AAGCUUAGACCGUUGC-UUUCUUGUUCGGAGAAGCAACAGGUUCGUUCCUGCACUGCUUCCCGCUGCUCUGUUACAUUG---UACUCCCCCAUGGGUGUCCCCUCC-------------- .(((.....(((..((-......)).))).((((((.((((......))))...))))))..)))..............---.((.(((....))).)).......-------------- ( -23.50, z-score = -0.10, R) >consensus AAACU___ACCGUUUCGUUUGCCGCCAGUGCUGGCGGUGCGGGAGUAUUCACGCCAAAUCUGGCUAGUGUUUUCAAAUGGCUCACCGCUCCAUAGAAGACGCCUCUUCU__AAAGU____ .........((((((.....(((((((....)))))))((....((....))((((....))))..))......)))))).............(((((......)))))........... (-16.43 = -16.42 + -0.02)
| Location | 1,822,073 – 1,822,188 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 69.79 |
| Shannon entropy | 0.55696 |
| G+C content | 0.51306 |
| Mean single sequence MFE | -34.16 |
| Consensus MFE | -16.18 |
| Energy contribution | -16.05 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.868866 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1822073 115 - 22422827 GGAUACUUU--AGAAGAUGCGUCUUCUAAGGAACGGUGAGCCAUUUGAAAACACUAGCCAGAUUUGGCGUGAUUACUCCUGCACCGCCAGCACUGGCGCCAAACGAAACGGU---AGUUU .....((((--((((((....))))))))))...((....))......((((....(((((..((((((((..........)).))))))..)))))(((.........)))---.)))) ( -33.30, z-score = -1.40, R) >droSim1.chrX 1282886 111 - 17042790 ----ACUUU--AGAAGAGACCUCUUCUAGAGAACGGUGAGCCAUUUGAAAACACUAGCCAGAUUUGGCGUGAAUACUCCCGCACCGCCAGCACUGGCGGCAAACGAAACGGU---AGUUU ----.((((--((((((....))))))))))....((..(((...((....))...(((((..((((((((..........)).))))))..))))))))..)).((((...---.)))) ( -35.20, z-score = -2.76, R) >droSec1.super_10 1622710 109 - 3036183 ----ACUUU--AGAAGAGACCUCUUCUAGAGAACGGUGAGCCAUUUGAAAACACUAGCCAGAUUUGGCGUGAAUACUCCCGCACCGCCAGCACUGGCGGCAAACGAAACGGU---AGU-- ----.((((--((((((....))))))))))...((....))..........((((.((.(.(((((((.((....)).))).((((((....))))))....)))).))))---)))-- ( -35.00, z-score = -2.82, R) >droYak2.chrX 15297238 117 + 21770863 GGAUACGUUUAAGGAUAGGCGACUUCUAUGGAGUAGUAGGCCGUUUGAAAACGCUAGCCAGAUUUGGCGUGAAAACACCAGCACCGUCAGCACUGGCGGCAAACGAAACGGG---AGUUU .....(((((.......(((.(((.((....)).)))..)))(((((.....(((.(((......)))((....))...))).((((((....))))))))))).)))))..---..... ( -34.50, z-score = -1.07, R) >droEre2.scaffold_4644 1806037 115 - 2521924 GGAUACGUU--AGAAGAGGCGACUUCUAUGGAGCGCUGGGCCAUUUGAAAACGCUAGCCAGAUUUGGCGUGAAUACUCCCGCACCGCCAGCACUGGCGGCAUACGAAACGGG---AGUUU ...((((((--(((...((((.(((.....))))))).(((...............)))...)))))))))...(((((((..((((((....)))))).........))))---))).. ( -38.06, z-score = -1.12, R) >droAna3.scaffold_12929 1818716 102 - 3277472 --------------GGAGGGGACACCCAUGGGGGAGUA---CAAUGUAACAGAGCAGCGGGAAGCAGUGCAGGAACGAACCUGUUGCUUCUCCGAACAAGAAA-GCAACGGUCUAAGCUU --------------((...((((.(((....)))....---...(((..........(((((((((..(((((......))))))))))).))).........-)))...))))...)). ( -28.91, z-score = -0.42, R) >consensus ____ACUUU__AGAAGAGGCGACUUCUAUGGAACGGUGAGCCAUUUGAAAACACUAGCCAGAUUUGGCGUGAAUACUCCCGCACCGCCAGCACUGGCGGCAAACGAAACGGU___AGUUU ...........(((((......))))).............................(((((..((((((((..........)).))))))..)))))....................... (-16.18 = -16.05 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:47 2011