| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,801,978 – 1,802,074 |
| Length | 96 |
| Max. P | 0.636353 |
| Location | 1,801,978 – 1,802,074 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 72.17 |
| Shannon entropy | 0.47574 |
| G+C content | 0.49127 |
| Mean single sequence MFE | -24.60 |
| Consensus MFE | -12.41 |
| Energy contribution | -13.61 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.636353 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1801978 96 - 22422827 -------------------CCACCAUGCAAAUUCGAUCUGACCACCCUUUCGAUAGUUAUUCGAUCAGCAACAGCUGAUUGCACCCUACGGAAUGACAUAUCCUAUUGCUAGGGA-- -------------------.........................((((..((((((.....((((((((....))))))))((..(....)..)).......))))))..)))).-- ( -23.40, z-score = -2.26, R) >droAna3.scaffold_13335 2916038 111 + 3335858 UUGUCCUCCAACAGUUGGACUACCCUAACGAUAGGUCAUCGAUAGCCAGGCGAUAGUUCUUAG----GCAACAGCUGAUGAUACUCUAGAAGAGAGCAUAAC--GCCCCUAGACUUA ..((((..(....)..))))....(((.((((.....)))).)))...((((.((((((((.(----((....)))((......)).....)))))).)).)--))).......... ( -22.30, z-score = 0.82, R) >droSim1.chrX 1274648 96 - 17042790 -------------------CCACCAUCCAAAUUCGAUCUGACCACCCUUUCGCUAGUUAUUCGAUCAGCAACAGCUGAUUGCACCCUACGAUAUGACAUAUCCGAUUGUUGGGGG-- -------------------...((.(((((...(((((.((........(((.(((.....((((((((....))))))))....)))))).........)).))))))))))))-- ( -23.53, z-score = -1.99, R) >droSec1.super_10 1602777 96 - 3036183 -------------------CCACCAUCCAAAUUCGAUCUGACCACCCUUUCGCUAGUUAUUCGAUCAGCAACAGCUGAUUGCACCCUACGAUAUGACAUAUCCGAUUGUUGGGGG-- -------------------...((.(((((...(((((.((........(((.(((.....((((((((....))))))))....)))))).........)).))))))))))))-- ( -23.53, z-score = -1.99, R) >droYak2.chrX 15276255 96 + 21770863 -------------------CCACCAUCCAAAUGCGAUCUGACCACCCUUCCGAUAGUUCUUCGAUCGGCAACAGCUGAUUGCACUCUACGGCACGGCAUAUCUGAUUGUUGGCGG-- -------------------((.(((.......((((((.((....((..(((.(((.....((((((((....))))))))....))))))...))....)).))))))))).))-- ( -26.51, z-score = -1.47, R) >droEre2.scaffold_4644 1780783 96 - 2521924 -------------------CCACCAUCCAAAUGCGAUCUGACCACCCUUCCGAUAGUUCUUCGAUCAGCACCAGCUGAUUGCACUCUACGGCAUGGCAUAUCCGAUUGUUGGCGG-- -------------------((.(((..(((.((.(((.((.(((.....(((.(((.....((((((((....))))))))....))))))..))))).))))).))).))).))-- ( -28.30, z-score = -2.27, R) >consensus ___________________CCACCAUCCAAAUUCGAUCUGACCACCCUUUCGAUAGUUAUUCGAUCAGCAACAGCUGAUUGCACCCUACGACAUGACAUAUCCGAUUGUUGGGGG__ .................................(((((.((........(((.(((.....((((((((....))))))))....)))))).........)).)))))......... (-12.41 = -13.61 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:45 2011