| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,795,716 – 1,795,836 |
| Length | 120 |
| Max. P | 0.965966 |
| Location | 1,795,716 – 1,795,836 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 121 |
| Reading direction | forward |
| Mean pairwise identity | 72.15 |
| Shannon entropy | 0.52851 |
| G+C content | 0.52760 |
| Mean single sequence MFE | -27.90 |
| Consensus MFE | -14.63 |
| Energy contribution | -16.52 |
| Covariance contribution | 1.89 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.76 |
| SVM RNA-class probability | 0.965966 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1795716 120 + 22422827 CGGCUGCCACUGAGUCCGUGAAACGCGACCUUUGACUUGCGAUGCCGAUUCCAGCCGAAAUCUACGGAUUCUUC-CGAAGAUGCCGGAACACCCACUUCACUCACACCCGUACCCACCAUG .((.(((...(((((..(((...(((((........))))).............(((..((((.((((....))-)).))))..)))......)))...))))).....))).))...... ( -29.60, z-score = -1.97, R) >droSim1.chrX 1268113 120 + 17042790 CGGCUGCCACUGAGUCCGUGAAACGCGACCUUUGACUUGCGAUGCCGAUUCCGUCCGAAUUUUACGGAUUCUUC-CGAAGACGCCGGAAUACCAACUUCACUCACACCCACACCCACCAUG .((.((.....(((((((((((((((((........)))))....((........))..))))))))))))(((-((.......)))))...............)).))............ ( -27.50, z-score = -1.68, R) >droSec1.super_10 1596272 120 + 3036183 CGGCUGCCACUGAGUCCGUGAAACGCGACCUUUGACUUGCGAUGCCGAUUCCGGCCGAAUUUUACGGAUUCUUC-CGAAGACGCCGGAAUACCAACUUCACUCACACCCACACCCACCAUG .((.((.....(((((((((((((((((........)))))..((((....))))....))))))))))))(((-((.......)))))...............)).))............ ( -33.60, z-score = -3.36, R) >droYak2.chrX 15270171 120 - 21770863 CGGCUGGCGCUGAGUCCGUGAAACGCGACCUUUGACUUGCGAUGCCGAUUCCGGCCGAAUUCUACGGAUUCUUC-CGAAGCCGCCGGAACUCCAACUUCAAACACACACACACCCACCAUG .(((.(((...(((((((((((.(((((........)))))..((((....))))....))).))))))))...-....))))))((....))............................ ( -35.90, z-score = -2.54, R) >droEre2.scaffold_4644 1774650 114 + 2521924 CGACUGCCGCUGAGUCCGUGAAACGCGACCUUUGACUUGCGAUGCCGAUUCCGGGCGAACUCUACGGAUUCUUC-CGAAACCGUCGGAACUCCAACUUCAAACACAC------CCACCAUG ...........(((((((((...(((((........))))).((((.......)))).....)))))))))(((-(((.....))))))..................------........ ( -28.00, z-score = -1.12, R) >droGri2.scaffold_15081 2564732 96 - 4274704 AAACAAUAACCAAACAAAAAAAAUAUGAACUUCGAUU----GUUCCGCUUCAAAGUUCAUUUUACUGCUCUUUGACGAUGCCUACCAUAUUCUCGCGGUA--------------------- ........................((((((((.((..----........)).))))))))..((((((.....((..(((.....)))..))..))))))--------------------- ( -12.80, z-score = -0.85, R) >consensus CGGCUGCCACUGAGUCCGUGAAACGCGACCUUUGACUUGCGAUGCCGAUUCCGGCCGAAUUCUACGGAUUCUUC_CGAAGACGCCGGAACACCAACUUCACUCACACCCACACCCACCAUG ((((.......(((((((((...(((((........)))))..((((....)))).......)))))))))...........))))................................... (-14.63 = -16.52 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:44 2011