| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,679,357 – 9,679,447 |
| Length | 90 |
| Max. P | 0.593025 |
| Location | 9,679,357 – 9,679,447 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 90.97 |
| Shannon entropy | 0.12435 |
| G+C content | 0.29028 |
| Mean single sequence MFE | -16.50 |
| Consensus MFE | -11.79 |
| Energy contribution | -11.57 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.593025 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9679357 90 + 23011544 UCGAAAAUGUGGUUACACAUACAAUUCAAUUAGCUAAUGAAGAACAUUUUCGAAACGGAAACAAUUUAUAUUGGAAUGAAAAAAAAAAAG------ ((((((((((.((.......))..((((.........))))..))))))))))...(....)............................------ ( -12.00, z-score = -1.41, R) >droSec1.super_3 5125562 96 + 7220098 UCGGAAAUGUGGUUACACAUACAAUUCAAUUAGCUAAUGAAGAACAUUUUCGAAACGGAAACCAUUUAUAUUGAAAUGAAGAAAAACAUUCCAAAC ..(((((((((....))))).((.((((((.....((((..(((....))).....(....)))))...)))))).))..........)))).... ( -17.10, z-score = -2.13, R) >droSim1.chr2L 9457018 96 + 22036055 UCGGAAAUGUGGUUACACAUACAAUUCAAUUAGCUAAUGAAGAACAUUUUCGAAACGGAAACAAUUUAUAUUGGAAUGAAGAAAAACAUUCCAAAC ((((((((((.((.......))..((((.........))))..))))))))))...(....)........((((((((........)))))))).. ( -20.40, z-score = -3.43, R) >consensus UCGGAAAUGUGGUUACACAUACAAUUCAAUUAGCUAAUGAAGAACAUUUUCGAAACGGAAACAAUUUAUAUUGGAAUGAAGAAAAACAUUCCAAAC ......(((((....))))).((.((((((.......((((((...))))))....(....).......)))))).)).................. (-11.79 = -11.57 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:28:46 2011