| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,794,528 – 1,794,618 |
| Length | 90 |
| Max. P | 0.879106 |
| Location | 1,794,528 – 1,794,618 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 57.19 |
| Shannon entropy | 0.82296 |
| G+C content | 0.34091 |
| Mean single sequence MFE | -16.67 |
| Consensus MFE | -5.49 |
| Energy contribution | -5.57 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.879106 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1794528 90 + 22422827 ----UUACUAUUACUUACCGCUUCGAAAGUAAAUUUAUCUGCUCAAAGGCAGGUUAACGCACUUUUGACGCAC---UUAGAUAU--UUAAAUUCGACAA--------------- ----...............((.((((((((......(((((((....)))))))......)))))))).))..---........--.............--------------- ( -19.30, z-score = -3.02, R) >droSim1.chrX 1266894 90 + 17042790 ----UCACUAUUACUUACCGCUUCGAAAGUAAAUUUAUCUGCUCAAAGGCAGGUUGCCGCAAUUUUAACGCAC---UUAGAUAU--UUAAAUUCGACAA--------------- ----..................(((((..((((..((((((......(((.....)))((.........))..---.)))))))--)))..)))))...--------------- ( -14.90, z-score = -1.03, R) >droSec1.super_10 1595054 90 + 3036183 ----UCACUAUUACUUACCGCUUCGAAAGUAAAUUUAUCUGCUCAAAGGCAGGUUGCCGCAAUUUUAACGCAC---UUAGAUAU--UUAAAUUCGACAA--------------- ----..................(((((..((((..((((((......(((.....)))((.........))..---.)))))))--)))..)))))...--------------- ( -14.90, z-score = -1.03, R) >droYak2.chrX 15268946 90 - 21770863 ----UCAAUAUUACUCACCGCGUCAGAAGUAAAUUUGGCUGCUCAAAGGCAGGUUCACGCACUUUUAACGCAC---UUAAAUAU--UUAAAUACGACAA--------------- ----...............((((.((((((......(.(((((....))))).)......)))))).))))..---........--.............--------------- ( -17.30, z-score = -1.97, R) >droEre2.scaffold_4644 1773419 90 + 2521924 ----UCACUAUUACUUACCGCGUCAGAUGUAAAUUUGGCUGCUCAAAGGCAGGUUUACGCACUUUUAACGCAC---UUAAAUAU--UUAAAUUCGACAA--------------- ----...............((((.(((((((((((((.((......)).))))))))))....))).))))..---........--.............--------------- ( -17.10, z-score = -1.55, R) >droAna3.scaffold_13335 2906898 91 - 3335858 -----UCAGAAUACCUACCGCGUCAAAAGGAUUUUUGUCUGCUCAGAGGCAGAUUUUUGCUUUUAGAAUGCAC---UUAAAUUACUUUAAAUUCGAGGG--------------- -----............(((((((.(((((......(((((((....))))))).....))))).).)))).(---(..((((......))))..))))--------------- ( -19.60, z-score = -1.10, R) >droPer1.super_30 95332 88 - 958394 ------UUAAGAACUUACCGCGUCGGGUAAAGGUAAUUCUGCUUAAAAGCAGGUUUCUGUUAAUCAAACACUC---UUAAAUCU-UUA-UAUUUAACAA--------------- ------((((((..(((((......)))))(((....((((((....))))))..))).............))---))))....-...-..........--------------- ( -15.00, z-score = -1.46, R) >dp4.chrXL_group1e 357652 89 + 12523060 ------UUAAGAACUUACCGCGUCGGGUAAAGGUAAUUCUGCUUAAAAGCAGGUUUCUGUUAAUAAAACACUC---UUAAAUCU-UUAAUAUUUAACAA--------------- ------((((((..(((((......)))))(((....((((((....))))))..))).............))---))))....-..............--------------- ( -15.00, z-score = -1.29, R) >droWil1.scaffold_180777 3169291 110 - 4753960 ----AUAUUAGUACUUACCGCGUCAGUAAAUGUUGAAACUGCUUUAAAGCAGACUUAAAGUAUUUAAAAACACACUUUAAAUACAAUUAAAAUGAAGAAAUAUCCACUCCACAA ----.......((((.((...)).))))..(((.((..(((((....))))).......(((((((((.......))))))))).......................)).))). ( -14.90, z-score = -1.28, R) >droVir3.scaffold_12970 9909284 97 - 11907090 -GUAUAUGGAUUACUCACCACGUCAAUUAUAAUAAAGUCUGCUGACAAGCAGGGUUUAUAAAAAAGUCUGCAUACACCUCA-CAAUAAAAGUCUUAACA--------------- -((((..(((((((.......))........(((((.((((((....)))))).))))).....)))))..))))......-.................--------------- ( -17.10, z-score = -1.56, R) >droMoj3.scaffold_6359 1318665 99 - 4525533 CGUAAUUGUUUUACUUACCGUGUCAGCAACAAAAUUCUCUGCUGCGACACAGGACUUAUACACGAAUAUAUAUGCACCGAAUUAAUAAUAAUUUAUAAA--------------- .((((.....))))...(((((((.(((.((........)).)))))))).)).........................((((((....)))))).....--------------- ( -14.50, z-score = -0.62, R) >droGri2.scaffold_15081 2563643 97 - 4274704 -GUGAAAUGGCUGCUUACCGUGUCAAUAACACUUUGGUCUGCUGAAAAGCAGAGUUUAUACAUAAAUUUGCAUACACU-AAUCAAUGAGAGUUUAUCAA--------------- -.(((...((((.((((..((((.....)))).((((((((((....)))))(((.(((.((......)).))).)))-.)))))))))))))..))).--------------- ( -20.40, z-score = -0.78, R) >consensus ____UCACUAUUACUUACCGCGUCAAAAAUAAAUUUGUCUGCUCAAAGGCAGGUUUACGCAAUUUAAACGCAC___UUAAAUAU_UUUAAAUUCGACAA_______________ ......................................(((((....))))).............................................................. ( -5.49 = -5.57 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:42 2011