| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,792,609 – 1,792,726 |
| Length | 117 |
| Max. P | 0.515447 |
| Location | 1,792,609 – 1,792,726 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.81 |
| Shannon entropy | 0.12221 |
| G+C content | 0.36959 |
| Mean single sequence MFE | -24.86 |
| Consensus MFE | -20.13 |
| Energy contribution | -21.37 |
| Covariance contribution | 1.24 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.515447 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1792609 117 - 22422827 UAUCCCCGUAUCGCAAUACAAUAACA---ACCCCUCUCCAACGUUAAAUGAGGGAGCGAUGCUUGUUUUUGACAAAUUUGGCAAAUUUGACAUAAAGUAUUUGCUUUUGUCAUUUGUUUC .......(((((((..((...))...---..(((((.............))))).))))))).......(((((((...(((((((............))))))))))))))........ ( -26.32, z-score = -2.05, R) >droEre2.scaffold_4644 1771508 116 - 2521924 UAUACCCGUAUCGCAAUACAAUAACA---ACCCCUCUCC-AAGAUAAUUGAGAAAGCGAUGCUUGUUUUUGACAAAUUUGGCAAAUGUGACAUAAAGUAUUUGCUUUUACCAUUUGUUUU .......(((((((..((...))...---.....((((.-((.....))))))..)))))))........(((((((..((((((((..........))))))))......))))))).. ( -18.00, z-score = -0.57, R) >droYak2.chrX 15267024 120 + 21770863 UACACCCGUAUCGCAAUACAAUAACAACCACCCCUCUCCAAAGAUAAUUGAGGAAGCGAUGCUUGUUUUUGACAAAUUUGGCAAAUGUGACAUAAAGUAUUUGCUUUUGCCAUUUGUUUG .......(((((((..((...)).........((((.............))))..)))))))........((((((..(((((((.(..(..........)..).))))))))))))).. ( -24.32, z-score = -1.52, R) >droSec1.super_10 1593161 117 - 3036183 UAUCCCCGUAUCGCUAUACAAUAACA---ACCCCUCUCCAACGUUAAAUGAGGGAGCGAUGCUUGUUUUUGACAAAUUUGGCAAAUGUGACAUAAAGUAUUUGCUUAUGCCAUUUGUUUC .......((((((((...........---..(((((.............)))))))))))))(((((...)))))....((((((((.(.(((((.((....)))))))))))))))).. ( -27.83, z-score = -2.33, R) >droSim1.chrX 1264965 117 - 17042790 UAUCCCCGUAUCGCUAUACAAUAACA---ACCCCUCUCCAACGUUAAAUGAGGGAGCGAUGCUUGUUUUUGACAAAUUUGGCAAAUGUGACAUAAAGUAUUUGCUUAUGCCAUUUGUUUC .......((((((((...........---..(((((.............)))))))))))))(((((...)))))....((((((((.(.(((((.((....)))))))))))))))).. ( -27.83, z-score = -2.33, R) >consensus UAUCCCCGUAUCGCAAUACAAUAACA___ACCCCUCUCCAACGUUAAAUGAGGGAGCGAUGCUUGUUUUUGACAAAUUUGGCAAAUGUGACAUAAAGUAUUUGCUUUUGCCAUUUGUUUC .......(((((((.................(((((.............))))).)))))))........((((((..(((((((.((((..........)))).))))))))))))).. (-20.13 = -21.37 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:42 2011