| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,787,263 – 1,787,358 |
| Length | 95 |
| Max. P | 0.524157 |
| Location | 1,787,263 – 1,787,358 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 96.34 |
| Shannon entropy | 0.05916 |
| G+C content | 0.48026 |
| Mean single sequence MFE | -16.52 |
| Consensus MFE | -14.95 |
| Energy contribution | -14.95 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.524157 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1787263 95 - 22422827 UGCAUAACCCCACUAAAAAGUAAACCAACGGAAACGUUAACAGGUUCAGACAAUUCGAAAAAUCCUCGGGACCAGCCCC-AAACCCCCGCAUCCAU (((................((.((((((((....))))....))))...))................(((......)))-........)))..... ( -16.40, z-score = -1.42, R) >droEre2.scaffold_4644 1766153 96 - 2521924 CGCAUAACCCCACUAAAAAGUAAACCAACGGAAACGUUUACAGGUUCAGACAAUUCGAAAAACCCUCGGGCCCCGCCCCAAAAACCCCGCAUCCAU .((................((.((((((((....))))....))))...))................((((...))))..........))...... ( -16.90, z-score = -1.41, R) >droSec1.super_10 1587883 95 - 3036183 UGCAUAACCCCACUAAAAAGUAAACCAACGGAAACGUUAACAGGUUCAGACAAUUCGAAAAACCCUCGGGACCAGCCCC-AAAACCCCGCAUCCAU (((................((.((((((((....))))....))))...))................(((......)))-........)))..... ( -16.40, z-score = -1.48, R) >droSim1.chrX 1260700 95 - 17042790 UGCAUAACCCCACUAAAAAGUAAACCAACGGAAACGUUAACAGGUUCAGACAAUUCGAAAAACCCUCGGGACCAGCCCC-AAAACCCCGCAUCCAU (((................((.((((((((....))))....))))...))................(((......)))-........)))..... ( -16.40, z-score = -1.48, R) >consensus UGCAUAACCCCACUAAAAAGUAAACCAACGGAAACGUUAACAGGUUCAGACAAUUCGAAAAACCCUCGGGACCAGCCCC_AAAACCCCGCAUCCAU .((................((.((((((((....))))....))))...))................(((.....)))..........))...... (-14.95 = -14.95 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:41 2011