| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,751,068 – 1,751,124 |
| Length | 56 |
| Max. P | 0.635139 |
| Location | 1,751,068 – 1,751,124 |
|---|---|
| Length | 56 |
| Sequences | 3 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 82.49 |
| Shannon entropy | 0.24476 |
| G+C content | 0.52916 |
| Mean single sequence MFE | -14.30 |
| Consensus MFE | -12.81 |
| Energy contribution | -13.03 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.635139 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1751068 56 - 22422827 UGACCAGUGAUGACCUAUCUCGGUGUUUGCGUAC---CAUCGGACAUGGAGAGCCCCAC ....((....)).....((((.(((((((.....---...))))))).))))....... ( -12.80, z-score = 0.24, R) >droYak2.chrX 1595982 59 - 21770863 UGACCACUGAUGACCUAUCUCCGUGUUUGUUCGCGUCCGUCACACAUGGAGAACCCCAC .................(((((((((.((..((....)).)).)))))))))....... ( -14.60, z-score = -1.18, R) >droEre2.scaffold_4644 1730210 59 - 2521924 UGACCACUGAUGACCUAUCUCCGUGUUUGCUUGCAUCCGUCAGAUAUGGAGAACCUCAC ..........(((....(((((((((((((........).))))))))))))...))). ( -15.50, z-score = -2.18, R) >consensus UGACCACUGAUGACCUAUCUCCGUGUUUGCUUGC_UCCGUCAGACAUGGAGAACCCCAC .................((((((((((((...........))))))))))))....... (-12.81 = -13.03 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:38 2011