| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,726,225 – 1,726,322 |
| Length | 97 |
| Max. P | 0.884400 |
| Location | 1,726,225 – 1,726,322 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.68 |
| Shannon entropy | 0.32325 |
| G+C content | 0.35617 |
| Mean single sequence MFE | -26.86 |
| Consensus MFE | -12.42 |
| Energy contribution | -11.46 |
| Covariance contribution | -0.96 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.85 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.884400 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1726225 97 + 22422827 CAAGUUGAACUGUGAACCGAAUUAAAGAGGAUA-------------CUUUGGGAUUCUUGAUACCCA----GUAUAUACGGAAGUAUUGUAUU-----GCAUUGUU-UUUAAUUUGUCGA ((((((((((.(((....(((((..((((....-------------))))..)))))........((----((((((((....))).))))))-----)))).)).-.)))))))).... ( -22.50, z-score = -1.90, R) >droEre2.scaffold_4644 1705321 116 + 2521924 CAAGUUGAAAUGUGAAACGAAUUACGGAGGAUAAGUGUACACACAACUUUGGGAUUCCUGAUACCCA----GUGUAUACAAAAGUAUUGUAUUCGAUUGCAUUGUUUCACAAUUUGGCAA ...((..((.((((((((((..............((((((((.......(((((((...))).))))----))))))))........((((......)))))))))))))).))..)).. ( -32.31, z-score = -2.76, R) >droYak2.chrX 1570608 98 + 21770863 CACGUUGAAUUGUGAACCGAAUUUAAGAGGAUAA------------UUUUGGGAUUCUUGAUACCCACACUGGGCAUACGGAAGUAUUUUAUU----------GUUUCACAAUUUGGCGA ..(((..(((((((((.(((..(((((((..(..------------.....)..)))))))..(((.....))).((((....))))....))----------).)))))))))..))). ( -30.00, z-score = -4.04, R) >droSec1.super_10 1527170 97 + 3036183 CAAGUUGAACUGUGAACCGAAUUAAAGAGGAUA-------------CUUUGGGAUUCUUAAUACCCA----GCAUAUACGGAAGUAUUGUAUU-----GCAUUAUU-CAUAAUUUGGCGA ...((..((.((((((..(((((..((((....-------------))))..)))))..........----(((.((((....)))).....)-----))....))-)))).))..)).. ( -24.90, z-score = -2.83, R) >droSim1.chrX 1218745 97 + 17042790 CAAGUUGAACUGUGAACCGAAUUAAAGAAGAUA-------------CUUUGGGAUUCUUAAUACCCA----GCAUAUACGGAAGUAUUGUAUU-----GCAUUGUU-CAUAAUUUGGCGA ...((..((.(((((((.(((((...((((...-------------))))..)))))..........----(((.((((....)))).....)-----))...)))-)))).))..)).. ( -24.60, z-score = -2.71, R) >consensus CAAGUUGAACUGUGAACCGAAUUAAAGAGGAUA_____________CUUUGGGAUUCUUGAUACCCA____GCAUAUACGGAAGUAUUGUAUU_____GCAUUGUU_CAUAAUUUGGCGA ...((..((.((((...................................(((((((...))).))))....(((.((((....))))))).................)))).))..)).. (-12.42 = -11.46 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:35 2011