| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,725,539 – 1,725,597 |
| Length | 58 |
| Max. P | 0.740010 |
| Location | 1,725,539 – 1,725,597 |
|---|---|
| Length | 58 |
| Sequences | 9 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 87.35 |
| Shannon entropy | 0.26204 |
| G+C content | 0.44723 |
| Mean single sequence MFE | -14.91 |
| Consensus MFE | -12.70 |
| Energy contribution | -13.59 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.740010 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1725539 58 + 22422827 CCACCGAUGCAAAUCAAUUACGCCAGAUUUGCAGUGCAAAACAAUGGCGUU---AUUUGUG ........((((((.....((((((..(((((...)))))....)))))).---)))))). ( -14.90, z-score = -1.73, R) >droWil1.scaffold_180702 3093607 55 + 4511350 ---CCCAUGCAAAUCAGUUACGCCAGAUUUGCAAGGCAAAACAAUGGCGUU---AAUUGUG ---...........(((((((((((..(((((...)))))....))))).)---))))).. ( -14.90, z-score = -1.91, R) >droSim1.chrX 1218052 58 + 17042790 CCACCGAUGCAAAUCAAUUACGCCAGAUUUGCAGUGCAAAACAAUGGCGUU---AUUUGUG ........((((((.....((((((..(((((...)))))....)))))).---)))))). ( -14.90, z-score = -1.73, R) >droSec1.super_10 1526471 58 + 3036183 CCACCGAUGCAAAUCAAUUACGCCAGAUUUGCAGUGCAAAACAAUGGCGUU---AUUUGUG ........((((((.....((((((..(((((...)))))....)))))).---)))))). ( -14.90, z-score = -1.73, R) >droYak2.chrX 1569827 58 + 21770863 CCACCGAUGCAAAUCAAUUACGCCAGAUUUGCAGUGCAAAACAAUGGCGUU---AUUUGUG ........((((((.....((((((..(((((...)))))....)))))).---)))))). ( -14.90, z-score = -1.73, R) >droEre2.scaffold_4644 1704580 58 + 2521924 CCACCGAUGCAAAUCAAUUACGCCAGAUUUGCAGUGCAAAACAAUGGCGUU---AUUUGUG ........((((((.....((((((..(((((...)))))....)))))).---)))))). ( -14.90, z-score = -1.73, R) >droAna3.scaffold_13117 1031317 58 + 5790199 CCACCGAUGCAAAUCAAUUGCGCCAGAUUUGCGGUGCAAAACGAUGGCGUUACAAAUG--- .....(((((..(((..(((((((........)))))))...))).))))).......--- ( -15.50, z-score = -1.09, R) >dp4.chrXL_group1a 6602566 61 + 9151740 ACAUCGAUGCAAAUCAGUUGCGCCCGAUUUGCAGUGCCAAACGAUGGCGUUGUUAUUUGUG ..((((.(((((.....)))))..))))..(((((((((.....)))))))))........ ( -14.40, z-score = 0.11, R) >droPer1.super_25 738559 61 - 1448063 ACACCGAUGCAAAUCAGUUGCACCCGAUUUGCAGUGCCAAACGAUGGCGUUGUUAUUUGUG .(((...((((((((.(......).))))))))..((((.....))))..........))) ( -14.90, z-score = -0.58, R) >consensus CCACCGAUGCAAAUCAAUUACGCCAGAUUUGCAGUGCAAAACAAUGGCGUU___AUUUGUG ........((((((.....((((((..(((((...)))))....))))))....)))))). (-12.70 = -13.59 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:33 2011