| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,724,381 – 1,724,471 |
| Length | 90 |
| Max. P | 0.716804 |
| Location | 1,724,381 – 1,724,471 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 66.95 |
| Shannon entropy | 0.60504 |
| G+C content | 0.50225 |
| Mean single sequence MFE | -28.80 |
| Consensus MFE | -12.13 |
| Energy contribution | -13.58 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.716804 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1724381 90 + 22422827 --AGACAACAAGUAGA-GUACGUGCAGUA---------GAGGCGCA-GUUCAUUCGUACGUGUGUUUUCGGGGCAUUCGAACUCCGAACCCCG-CGCACUUGGA------ --......(((((...-((((((((....---------...)))).-(......)))))(((((..(((((((........)))))))...))-))))))))..------ ( -27.70, z-score = -0.76, R) >droSim1.chrX 1216908 99 + 17042790 --AGACAACAAGUAGA-GUACGUGCAGUAAAAGCAGUAGAAGCGCA-GUUUAUUCGUACGUGUUUAUUCGGGGCAUUCGAACCCCGAACCCCG-CGCACUUGGA------ --......(((((.((-((((((((((((((.((.......))...-.)))))).)))))))))).(((((((........))))))).....-...)))))..------ ( -29.40, z-score = -1.86, R) >droSec1.super_10 1525341 99 + 3036183 --AGAUAACAAGUAGA-GUACGUGCAGUAAAAGCAGUAGAAGCGCA-GUUUAUUCGUACGUGUUUAUUCGGGGCAUUCGAACCCCGAACCCCG-CGCACUUGGG------ --......(((((.((-((((((((((((((.((.......))...-.)))))).)))))))))).(((((((........))))))).....-...)))))..------ ( -29.40, z-score = -1.84, R) >droYak2.chrX 1568639 106 + 21770863 --AGAAAACAAGUAAG-GUACGUGCAGUAAGUGCAGUAGAAUCGCA-GUUUACUCGUACGUGUUUAUUCGGGGCAUUUGACCACCGAUUCCCAACCCCCUUGCAUUUGGC --.........(((((-(((((((((((((((((.........)))-.)))))).))))))).....(((((((....).)).))))..........))))))....... ( -30.20, z-score = -1.81, R) >droEre2.scaffold_4644 1703427 83 + 2521924 --AGACAACAAGUGAA-AUACGUGCAGUA---------GAAGCGCA-GUUUAGUCGUACGUGUUUAUUCGGGGAAUUCUAACCCCA--------UGCAUUUGGC------ --......((((((((-(((((((((.((---------((......-.)))).).))))))))))....((((........)))).--------..))))))..------ ( -24.40, z-score = -2.36, R) >droAna3.scaffold_13117 1030278 103 + 5790199 AGGGAGUACAUAUGUACGCACGUGCAGUAAUAGCAUUGAACUGGCGCAUGUGGCCGUACGUGUUUUUCCC---CUUGUGGCUUGCCGGCCCCCCUCCAGCUCCAGC---- .(((((...((((((((((((((((.((..(((.......))))))))))))..)))))))))..)))))---.(((..(((.(..((....))..))))..))).---- ( -31.70, z-score = 0.37, R) >consensus __AGACAACAAGUAGA_GUACGUGCAGUAA_AGCAGUAGAAGCGCA_GUUUAUUCGUACGUGUUUAUUCGGGGCAUUCGAACCCCGAACCCCG_CGCACUUGGA______ ........(((((.....(((((((..............................))))))).....((((((........))))))..........)))))........ (-12.13 = -13.58 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:32 2011