| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,703,100 – 1,703,193 |
| Length | 93 |
| Max. P | 0.753715 |
| Location | 1,703,100 – 1,703,193 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 60.33 |
| Shannon entropy | 0.64896 |
| G+C content | 0.40679 |
| Mean single sequence MFE | -22.81 |
| Consensus MFE | -8.56 |
| Energy contribution | -9.72 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.753715 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1703100 93 + 22422827 ACGUCAUUUUCCAAAAAUGAUUAUGCAGGUGGCUUUGGAGUCAUUUCAACGUGCUAGCAAGACUACCU-----AAUAUGUCACAGAGAUCGUUUUUGG ..........((((((((((((.(....(((((...((((((..................)))).)).-----.....))))).).)))))))))))) ( -21.97, z-score = -1.23, R) >droSim1.chrX 1196537 98 + 17042790 ACGUCAUUUUGCAAAAAUGAUUAUGCAGGUGGCUUUGGAGCCAUUUCAACGUGCUAGCAAGGCGACCUAACCUAAUAUGUCACAGAGAUCGUUUUUGG ...........(((((((((((.((.((((.((((((.((((........).)))..)))))).))))...(......)...))..))))))))))). ( -25.70, z-score = -1.16, R) >droSec1.super_10 1498184 98 + 3036183 ACGUCAUUUUCCAAAAAUGAUUAUGCAGGUGGCUUUGGAGCCAUUUCAACGUGCUAGCAAGGCGACCUAACCUAAUAAGUCACAGAGAUCGUUUUUGG ..........((((((((((((.((.((((.((((((.((((........).)))..)))))).))))...((....))...))..)))))))))))) ( -28.00, z-score = -2.33, R) >dp4.chrXL_group1a 4293588 95 + 9151740 ACGUC-UUAAUCAUUUACUAAGAGUUAAAUAAAUCAGUAUAUCCUGUAUCCAGCUCAAGGAGCUGUCUG--CUGGCUCUGUACAUACGUACCUAUCUG (((((-(((.........))))).............(((((.((.(((..((((((...))))))..))--).))...)))))...)))......... ( -19.20, z-score = -1.30, R) >droPer1.super_11 870928 95 + 2846995 ACGUC-UUAAUCAUUUACUAAGAGUUAAAUAAAUCAGUAUAUCCUGUAUCCAGCUCAAGGAGCUGUCUG--CUGGCUCUGUACAUACGUACCUAUCUG (((((-(((.........))))).............(((((.((.(((..((((((...))))))..))--).))...)))))...)))......... ( -19.20, z-score = -1.30, R) >consensus ACGUCAUUUUCCAAAAAUGAUUAUGCAGGUGGCUUUGGAGACAUUUCAACGUGCUAGCAAGGCUACCUA__CUAAUACGUCACAGAGAUCGUUUUUGG ..........((((((((((((.....(((((((....)))))))......((((.....))))......................)))))))))))) ( -8.56 = -9.72 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:27 2011