| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,697,523 – 1,697,604 |
| Length | 81 |
| Max. P | 0.959164 |
| Location | 1,697,523 – 1,697,604 |
|---|---|
| Length | 81 |
| Sequences | 5 |
| Columns | 82 |
| Reading direction | reverse |
| Mean pairwise identity | 63.90 |
| Shannon entropy | 0.57149 |
| G+C content | 0.45766 |
| Mean single sequence MFE | -18.04 |
| Consensus MFE | -6.22 |
| Energy contribution | -4.42 |
| Covariance contribution | -1.80 |
| Combinations/Pair | 1.67 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.66 |
| SVM RNA-class probability | 0.959164 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1697523 81 - 22422827 ACUGACUACGCUUCCGCGUAUCCCGCCCAUUGCGGCCACAUUCCUUUUCCACUGUAGAUACAUAAAUACAUAUGUAUCUGC- ...((.(((((....)))))))((((.....))))..................(((((((((((......)))))))))))- ( -22.60, z-score = -4.91, R) >droSim1.chrU 14398432 75 - 15797150 ACUGACU--GCUUUCGCGAAUCCCGCCCAUUGCGGCCACAUUCCUUUUCCACUGUAGAUAC----AUACAUAUGUAUCUGC- ..((.((--((....(((.....))).....)))).))...............((((((((----((....))))))))))- ( -18.90, z-score = -3.64, R) >droSec1.super_10 1492436 75 - 3036183 ACUGACU--GCUUUCGCGUAUCCCGCCCAUUGCGGCCACAUUCCUUUUCCACUGUAGAUAC----AUACAUAUGUAUCUGC- ..((.((--((....(((.....))).....)))).))...............((((((((----((....))))))))))- ( -18.40, z-score = -3.25, R) >dp4.chrXL_group1a 4284446 71 - 9151740 ACAGAGUCUUUUUCCUCGUGUC-------UCGUGUCUGAAUCUGUUUCACAUUGGAGGGGU----AUCUGUGCAUUUUUGUA (((((...(((((((..(((..-------.((.((....)).))...)))...))))))).----.)))))(((....))). ( -12.50, z-score = 0.28, R) >droPer1.super_11 861930 71 - 2846995 ACAGAGUCUUUUUCCUCGUGUC-------UCGGGUCUGAAUCUGUUUCACAUUGGAGGGGU----AUCUGUGCAUUUUUGUA (((((...(((((((..(((..-------.(((((....)))))...)))...))))))).----.)))))(((....))). ( -17.80, z-score = -1.35, R) >consensus ACUGACU__GCUUCCGCGUAUCCCGCCCAUUGCGGCCACAUUCCUUUUCCACUGUAGAUAC____AUACAUAUGUAUCUGC_ ..............((((............))))...................((((((((............)))))))). ( -6.22 = -4.42 + -1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:25 2011