| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,689,360 – 1,689,456 |
| Length | 96 |
| Max. P | 0.566813 |
| Location | 1,689,360 – 1,689,456 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 81.74 |
| Shannon entropy | 0.29366 |
| G+C content | 0.53126 |
| Mean single sequence MFE | -21.30 |
| Consensus MFE | -15.18 |
| Energy contribution | -15.68 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.566813 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1689360 96 + 22422827 UAGUGCGACA-GUCUGUCUGUCUGCGCUCCGUUU-CCCAAACAACACCCU---CCCAUCCCUGAUGUGCGUUUCUGGCCAUCCGGGCAACGAAAUUUAAAA .(((((((((-(.....))))).)))))......-...............---.....(((.((((.((.......)))))).)))............... ( -23.40, z-score = -1.55, R) >droEre2.scaffold_4644 1667480 78 + 2521924 UAGUGCGACA-GUCUGUCUGUCUGCGCUCCGUUU----------------------GCCCCCGAUGUGCGUUGCUGGCCAUCCGGACAGCGAGAUUUAAAA .(((((((((-(.....))))).)))))...(((----------------------((.((.((((.((.......)))))).))...)))))........ ( -24.10, z-score = -1.12, R) >droSec1.super_10 1484172 99 + 3036183 UAGUGCGACA-GUCUGUCUGUCUGCGCUCCGUUU-CCCAAACCCCACCCUCCUCCCAUCCCAUAUGUGCGUUUCUGGCCAUCCGGCUAACGAAAUUUAAAA .(((((((((-(.....))))).)))))......-..................................((((((((((....)))))..)))))...... ( -20.40, z-score = -2.46, R) >droSim1.chrX_random 1092379 101 + 5698898 UAGUGCGACAAGUCUGUCUGUCUGCGCUCCGUUUUCCCAAACCCCACCCUCCUCCCAUCCCAUAUGUGCGUUUCUGGCCAUCCGGCUAACGAAAUUUAAAA .(((((((((........)))).))))).........................................((((((((((....)))))..)))))...... ( -17.30, z-score = -1.11, R) >consensus UAGUGCGACA_GUCUGUCUGUCUGCGCUCCGUUU_CCCAAACCCCACCCU___CCCAUCCCAGAUGUGCGUUUCUGGCCAUCCGGCCAACGAAAUUUAAAA .(((((((((........)))).)))))...............................((.((((.((.......)))))).))................ (-15.18 = -15.68 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:24 2011