| Sequence ID | dm3.chrX |
|---|---|
| Location | 1,688,939 – 1,689,031 |
| Length | 92 |
| Max. P | 0.548073 |
| Location | 1,688,939 – 1,689,031 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 74.01 |
| Shannon entropy | 0.34482 |
| G+C content | 0.41987 |
| Mean single sequence MFE | -22.73 |
| Consensus MFE | -14.13 |
| Energy contribution | -14.70 |
| Covariance contribution | 0.57 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.548073 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 1688939 92 + 22422827 UGUAAUGCAAACACCGUUUGAAAUCAAUGAUAUAGAAAGUCAACUGGGAAACUCGGAUUGCAGCAGCAGCCGCAGUUUAAGGAGACUUUCAG--------------- .......(((((...)))))..............(((((((..((...((((((((.((((....))))))).))))).))..)))))))..--------------- ( -26.10, z-score = -2.75, R) >droSec1.super_10 1483748 90 + 3036183 AGUAAUGCAAACACUGUUUGAAAUCAAUGAUA--GGAAGUCAACUGGGAAACUAGGAUUGCGGCAGCGGCAACAGUUUAAGGAGACUUUCAG--------------- .......(((((...)))))............--(((((((..((((....))))(((((..((....))..)))))......)))))))..--------------- ( -23.40, z-score = -2.35, R) >droYak2.chrX 1534460 104 + 21770863 AGUAAUGCAAACAACGUUUAAAAUCAAUGAUA--GUAAGUCAACUGGGAGGC-GAAACGAUUGCAGCAGUAACAGUUUAGGGAGACUUUCAGUUAAGCCCCAUAGCG ......((...................((((.--....))))....((.(((-.((((..((((....))))..))))(((....)))........)))))...)). ( -18.70, z-score = 0.20, R) >consensus AGUAAUGCAAACACCGUUUGAAAUCAAUGAUA__GAAAGUCAACUGGGAAACUAGGAUUGCAGCAGCAGCAACAGUUUAAGGAGACUUUCAG_______________ .......(((((...)))))..............(((((((..((((....)).(((((((.((....)).))))))).))..)))))))................. (-14.13 = -14.70 + 0.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:07:23 2011